Alligator mississippiensis (American alligator): 102570113
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Entry
102570113 CDS
T03087
Symbol
TAF4B
Name
(RefSeq) TATA-box binding protein associated factor 4b
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102570113 (TAF4B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102570113 (TAF4B)
03036 Chromosome and associated proteins [BR:
amj03036
]
102570113 (TAF4B)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102570113 (TAF4B)
Coactivators
SAGA/TFTC/STAGA complex
102570113 (TAF4B)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
102570113 (TAF4B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
NapD
Motif
Other DBs
NCBI-GeneID:
102570113
NCBI-ProteinID:
XP_019342569
LinkDB
All DBs
Position
Un
AA seq
885 aa
AA seq
DB search
MCGSLSRIVVINMKRIFSVTELAYKDRLEAGPGRPHVCAAAEPAGHGCPCGLAAAALPAA
PPLSSSSMSTTVRVMPAGAPEPAAAASGGPCSQPAXXXXTQPPAAGPKPPAAQVVAPKAP
QTTTIQLPANFQIPPGTVLIRSSNGQLMLVSQQAIARAQSQTQNNTSARPSIPTSTPAVR
ICTVQNPGTQLLKKVIATPVKTVLQTTNSVTSTVQRPAVVQPAAVTASATTITVVKPSTT
GASVKPPITGLPAQPISQKAASVKAESIMVAQANPSTEMLENVKKCKNFLATLIKLASSG
TQAPEMGQNVKNLVQNLLEAKIEPEEFTKKLYIELKSSPQPYLVPFLKKSLLALRQLMPN
AQSFIQQCMQQQSPTQEAVSTQISSATTSTVPVTTSAVVMTCPQPTKSVLSSTVVTASQA
VKPVLSTAVVRTPPTTSLQTAKPVLASVPVTATLQPANPVFTSTVGTTPLTTINVVKPVF
TSSVATNSLQTVKPTLVSALKPVLASTATTSLQSVKPVIGTPISIKITQPNSLLAHSGST
QQAIKVKQLLVQQTSGGMGKPVATLPQTSLLTLQTPANKRMPLNTLIQSNQFPAGSIVKQ
ITLPGNKILSLQASPVQKNKIKENGTTSFRDEDDINDVTSMAGVNLNEENACILATNSEL
VGTVIRSCADNPFLSSEVLQKKILNIGKRHDIMELNSDVVNLISHATQERLRGLLEKLTV
IAQHRVTNHKENSKYIVTSDTRAQLRFLEKLDHMEKRRKDEEEREMLLRAAKSRSNKEDP
EQLRLKQKAKEMQQLELAQMQQREANLTALAAIGPRKKRPLDSNIASGLEGLNGNGTALG
SSGFSLTKQLLRPRITRVCLRDLIFCMEQEREMKHSLVLYRAFLK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgggtcgttgtccaggatagttgtgattaacatgaaacgtatattcagtgtcact
gagcttgcgtataaagacagactggaggccgggccgggtcggccccacgtgtgtgctgcc
gcggagccggcagggcatggatgcccatgtggtttggcagctgcagcgctgcccgccgcg
ccgcctctctcctcctcctccatgagcaccacggtgcgggtcatgcccgcgggcgccccg
gagccggcggccgccgcgagcggggggccgtgctcgcagcccgcccnnnnnnnnnncacc
cagccgcccgccgccggccccaagccacccgccgcacaggtcgtggcgcccaaagccccg
cagaccaccaccatccagctccccgccaactttcagatcccaccaggaacagttctcatc
agaagtagcaatggtcagctgatgttagtatctcaacaagcaatagctcgagcacagagc
cagacgcaaaataatacaagtgcaagaccatcgatacctacaagcacacctgcagtcaga
atatgtactgtacagaatcctggcacccagttactaaaaaaagtcatagcaactcctgtg
aaaacggtattgcaaaccacaaattctgtgacctctactgttcagagacctgctgtagta
caaccagcagctgtaactgccagtgctactactattactgttgtgaagccttcaactact
ggagcatctgtaaagcctccaattacaggactgcctgcacaacctatttcccaaaaggct
gcctctgtcaaagcagagagcataatggtagcacaggccaatccttctacggaaatgtta
gagaatgtgaagaaatgcaagaattttcttgcaacattaataaagctggcatccagtgga
actcaagccccagaaatgggacagaatgtgaagaatctggtacaaaatctgttggaagcc
aaaattgaaccagaagaatttacaaaaaaactatacatagaactcaagtcttctccacaa
ccatacctggtccctttcctcaagaaaagtctgcttgccttacggcagctgatgcccaat
gctcagagctttatccagcagtgcatgcagcagcagtctccaacccaagaagctgtgtct
acccagatctcttcagcaacaacttccactgttccagtgacaacatcagctgtggtaatg
acctgtcctcagcccacaaaatcagtcctttcctccacagtggtcacagcctctcaagct
gtaaaaccagttctttccactgcagtggtgaggacaccaccaacaacttcactccagact
gcgaaaccagtccttgcttctgtcccagtgacagccactcttcagcctgcaaatccagtt
ttcacctctacagtaggaaccacaccactcacaactatcaatgttgtgaagccagtcttt
acctcttcagtcgcaacgaactcgcttcagactgtgaagccaactttagtatcagcgttg
aagccggtcttggcctctacagcaacaacctctcttcagtctgtgaagccagtcattggg
actcctattagtattaaaattacacaacccaactctcttcttgctcattcaggcagtact
cagcaggcaattaaagtgaaacagctgctagtacaacagacatcaggaggcatgggaaaa
ccagtggccacccttccacaaacctctttgctgactcttcaaacacctgctaataaaagg
atgccattaaacacactgattcagtctaaccagtttcctgcaggttccattgtgaaacaa
atcaccctgccaggaaataaaattctgtcgcttcaagcatctcctgttcagaaaaataaa
ataaaagagaatggaacaacatccttcagagatgaagatgatatcaatgatgtaacttct
atggctggggtcaaccttaatgaggagaatgcatgcatcttggcaacaaattctgaacta
gttggtacggtgatccgatcttgtgcagacaatccattcctctcctcagaggtgctgcaa
aagaaaattttaaacataggtaaaaggcatgacattatggaacttaactctgatgttgtg
aacttgatctcccatgctacacaggagagattacgagggctcctagaaaaactgactgta
attgctcagcatcgagtgacaaaccataaggagaacagtaagtacatagtgaccagtgac
accagagcacagcttaggtttcttgagaagctggatcacatggaaaaacggagaaaggat
gaagaggaacgagaaatgttgttacgagcagcaaagagtcgctccaataaagaagatcca
gagcagctgcgattaaaacagaaagctaaagagatgcaacagttggagctggcacagatg
caacagagagaagccaacctcacggccttggcagccattggaccaaggaagaagagacca
ctggattcaaacattgcatctgggctggagggcttgaatggaaatggaacggctcttgga
tcatctggttttagccttacaaaacagctgcttcgtccaagaataacacgtgtctgtctc
agggacttgatattctgcatggaacaagagagggagatgaagcattctctagtcttgtac
cgtgcttttctgaagtga
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