KEGG   Alligator mississippiensis (American alligator): 102570152
Entry
102570152         CDS       T03087                                 
Symbol
DDB2
Name
(RefSeq) damage specific DNA binding protein 2
  KO
K10140  DNA damage-binding protein 2
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03420  Nucleotide excision repair
amj04115  p53 signaling pathway
amj04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102570152 (DDB2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102570152 (DDB2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    102570152 (DDB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:amj04121]
    102570152 (DDB2)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102570152 (DDB2)
Ubiquitin system [BR:amj04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102570152 (DDB2)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      102570152 (DDB2)
SSDB
Motif
Pfam: WD40_Prp19 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_RIG_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WD40_RFWD3 PEP5_VPS11_N Beta-prop_TEP1_2nd Beta-prop_Vps41 NBCH_WD40
Other DBs
NCBI-GeneID: 102570152
NCBI-ProteinID: XP_014457693
LinkDB
Position
Un
AA seq 508 aa
MVPANQPKEKKHMKAHEHQPEEEAKSAEKRKRESGELENEPQAKRLFVRKAMKPPENTGW
AKGGSTIRNMGVLFHQLKQHYSIIHYIYQNMLGGSIRPQLRQCLQLPFLRSLASYRPFRT
ASPFDRRVTCLEWHPTHPSTVAVGSKGGDIILWDYEVLNKTCFIKGMGAGGAITGMKFNP
FNPSQLYTSSIAGTTTLQDFNGSTLRVFTSTEDWDFWYCSVDVSASCRTVVTGDNVGNVV
LLSTGGDEIWKLKLHKKKVTHVEFNSRCDWLLATASVDQTVKIWDLRNIKDKTSFLHMLP
HDKPVNAAYFSPTDGAKLLSTDQHSEIRVYSSSDWSKPQHLIPHPHRQFQHLTPIKATWH
PRYDLIVAGRYPDPKFPSYTVDELRTVDIFDGNTGEMVCQLHDLNASGIISLNKFNPMGD
TLASGMGFNILIWSREEMVAKKQEHLLKAMTQQGIGGRSSSRRGGQRQPNQGKSKLKAKL
LAQELEETKIKGKNTKSQGRKQKKDLED
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggtccctgccaaccagccgaaggaaaagaagcacatgaaggctcatgagcatcagcca
gaggaagaggcaaagtcagctgagaaaaggaaacgagaatctggagaactagagaatgag
ccacaagcaaagagactgtttgtgagaaaagctatgaaacccccagagaatacaggctgg
gctaaaggcggctccacgatcagaaacatgggggtgctcttccatcagctgaagcagcac
tacagcatcatccattacatctaccagaacatgctgggtggctctatccggccacaactc
agacagtgtctccagctgcccttcctgcgttctctcgcctcataccgccccttccgaaca
gcaagcccctttgacaggagagtgacatgtctggaatggcatccaacgcaccccagtact
gtggctgtgggctccaaaggtggagatatcattctttgggactacgaagtacttaacaaa
acctgcttcataaaggggatgggagctggaggggccatcacaggaatgaagtttaaccct
tttaaccctagtcagctgtacacatcgtcaattgccggcactaccaccctgcaggatttt
aatggcagtacgctccgggtcttcaccagcaccgaggactgggatttctggtattgcagt
gttgatgtgtctgcaagctgccggactgtggtgacaggtgataacgtgggtaatgtggtc
ctgctcagcactggtggtgatgagatttggaagctgaaattacacaagaagaaagtaact
catgtggagtttaactctcgctgcgattggctcttagccacagcctctgtggaccagaca
gtcaaaatctgggacctcaggaacatcaaagacaagacaagtttccttcacatgcttcct
catgacaaacctgtcaatgctgcttacttcagcccaacagatggtgcaaagctcttgagc
acagaccaacacagtgaaatcagagtttattcctcttcagattggagcaaaccacagcac
ctgatcccacatccacatcggcagttccagcacctcacaccaatcaaggcaacgtggcat
cctcgttatgacctcattgtggcaggtcgttacccagaccccaagttccccagctacact
gtggatgaactacgaactgttgatatatttgatggaaacactggggagatggtgtgccaa
ctccatgacctcaatgcatctggcattatttcacttaataagtttaaccctatgggagac
acactggcctctggcatgggctttaatattttgatctggagtcgggaggagatggtggcc
aagaagcaggaacacctcttgaaagccatgacacagcaggggattggaggcaggagctcc
tccagacgtggggggcagagacaaccaaatcaaggaaaaagcaaactcaaagccaagctg
cttgctcaggaactggaagagactaaaataaagggcaaaaataccaaatcacagggcaga
aagcagaagaaggatctagaggactga

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