Alligator mississippiensis (American alligator): 102570178
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Entry
102570178 CDS
T03087
Symbol
DDX39A
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03013
Nucleocytoplasmic transport
amj03015
mRNA surveillance pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102570178 (DDX39A)
09122 Translation
03013 Nucleocytoplasmic transport
102570178 (DDX39A)
03015 mRNA surveillance pathway
102570178 (DDX39A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102570178 (DDX39A)
03041 Spliceosome [BR:
amj03041
]
102570178 (DDX39A)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102570178 (DDX39A)
Spliceosome [BR:
amj03041
]
Complex C
Other components
EJC/TREX
102570178 (DDX39A)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102570178 (DDX39A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
102570178
NCBI-ProteinID:
XP_014450022
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAGAGDGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgacgtggataatgagctcctggactatgaggatgatgaggtggaaaac
gcaggcgcaggcgacggcgtggacgtgccctccaaaaaggacgtcaagggctcctacgtc
tccatccacagctccggcttccgtgacttcttgctaaagcccgagctgctccgtgccatc
gtcgactgcggctttgagcacccctctgaagtgcagcatgagtgcatcccacaggccatc
ctgggcatggacgtgctctgccaggctaaatcaggcatgggcaaaacagccgtcttcgtg
ctggccacgttgcagcagctggagcctgtcacggggcaggtgtcggtgctggtgatgtgc
cacacgcgggagctggcattccagatcagcaaagaatacgaacgcttctccaagtacatg
cccagcgtaaaggtggcggtgttttttgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccgcacattgtggtggggactccgggccggatcctggccctggcg
cggaacaagagcctcaacctcaaacacatcaagcatttcatcctggacgagtgtgacaag
atgctggagcaactcgatatgcgccgggatgtccaggagatcttccgcatgaccccgcat
gaaaagcaggtcatgatgttcagcgccaccctgagcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggacgatgagacaaagctgacgctgcat
gggctgcagcagtactatgtcaaactgaaggacaatgagaagaaccgcaagctcttcgat
ctcctcgacgtccttgaattcaaccaggtggtgatcttcgtgaagtccgtgcaacgctgc
attgccctagcacagctgctggtggagcagaacttcccagccattgccatccaccgtggc
atgccccaggaggagaggctgtcacggtaccagcagttcaaggacttccagcgccgcatc
ttggtagccaccaacttgtttgggcgggggatggacattgagcgtgtgaacatcgccttc
aactacgacatgcccgaggattcggacacctatctgcaccgggtggcacgtgctggacgc
ttcggcaccaaaggcctggccatcacctttgtgtcagatgagaatgacgctaagatcctg
aatgatgtccaggatcgctttgaggtgaacatcagcgagcttcctgatgagatcgacatc
tcctcctacattgagcagacccgataa
DBGET
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