Alligator mississippiensis (American alligator): 102570387
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Entry
102570387 CDS
T03087
Symbol
PABPC1
Name
(RefSeq) poly(A) binding protein cytoplasmic 1
KO
K13126
polyadenylate-binding protein
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102570387 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
102570387 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102570387 (PABPC1)
03041 Spliceosome [BR:
amj03041
]
102570387 (PABPC1)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102570387 (PABPC1)
mRNA cycle factors
Stress granule specific factors
102570387 (PABPC1)
Spliceosome [BR:
amj03041
]
Complex C
Other components
Complex C specific factors
102570387 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
102570387
NCBI-ProteinID:
XP_006260975
LinkDB
All DBs
Position
Un
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSAQ
RVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPAGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtcaccgaggccatgctgtacgagaagttcagccccgccgggcccatcctgtccatc
cgcgtctgccgggacatgatcacccgccgctccctgggctacgcctacgtcaacttccag
cagcccgccgacgctgaacgagctttggataccatgaactttgatgtcattaagggcaag
ccggtgcgcattatgtggtctcagcgtgatccatctttgcgcaaaagtggtgttggaaac
attttcatcaaaaacttggataaatccattgataataaagctttgtatgatacattttct
gcttttggaaacatcctctcttgtaaggtggtttgtgatgaaaatggatctaagggctat
ggatttgtacattttgagacacaagaagctgctgaaagagctattgaaaaaatgaatggt
atgctgcttaacgaccgcaaagtatttgttggaaggtttaaatctcgtaaagaacgtgag
gcagaacttggagctagagctaaggaatttactaatgtttacatcaaaaattttggagaa
gacatggatgacgaaagacttaaggaactctttggcaagtttgggcctgccttaagtgtg
aaagttatgaccgatgagagtggaaaatccaaaggctttggctttgttagttttgaaaga
catgaagatgcccagaaagctgtggatgagatgaatgggaaagaactcaatggaaagcaa
atctatgtaggccgggcccagaaaaaagtggaaaggcaaacagagctcaagcgcaaattt
gagcaaatgaagcaggacaggatcaccagatatcagggagtaaacctttatgtgaaaaat
cttgatgatgggattgatgatgagcgtctacgaaaagaattttctccatttggcacaatc
acgagtgcaaaggtcatgatggaaggtggccgcagcaaagggtttgggtttgtatgcttt
tcttcaccagaagaagccaccaaagctgtcacagaaatgaatggcagaattgtggccact
aagccattatatgtagctctagctcaacgtaaagaggaacgccaggctcatctcaccaac
cagtatatgcagagaatggcaagtgtaagagcagtacccaatcctgtaatcaacccctac
cagccagcacctccttcaggttatttcatggcagctatcccacagacccagaaccgtgct
gcatactatcctactagccaacttgctcaactcagaccaagtcctcgctggactgctcag
ggtgccagacctcatcctttccagaacatgcctggtgctatccgcccagcagctcccaga
ccaccatttagtaccatgagaccagcttcttcacaagttccacgagtcatgtcagcacaa
cgtgttgctaatacatcaacacaaacgatgggtccgcgtcctgcagcagcagctactgca
gccactcctgctgtgcgcacagttccacagtacaagtatgctgctggtgttcgtaaccct
cagcaacatcttaacacacagccacaggttgctatgcagcagcctgctgtccatgtgcaa
ggtcaggaaccattgactgcttccatgttggcttctgctcctccacaagaacaaaagcag
atgttaggtgaacggctgtttccacttattcaatccatgcaccctactctggcgggtaaa
atcaccggtatgttgttggagattgacaactctgagctcctccacatgctcgagtctcct
gagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagctaaa
gaggctgctcagaaagcagttaacaaccctgctggggttccaagtgtttaa
DBGET
integrated database retrieval system
