Alligator mississippiensis (American alligator): 102570525
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Entry
102570525 CDS
T03087
Symbol
BARD1
Name
(RefSeq) BRCA1 associated RING domain 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102570525 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102570525 (BARD1)
04121 Ubiquitin system [BR:
amj04121
]
102570525 (BARD1)
03036 Chromosome and associated proteins [BR:
amj03036
]
102570525 (BARD1)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102570525 (BARD1)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102570525 (BARD1)
Ubiquitin system [BR:
amj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102570525 (BARD1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102570525 (BARD1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102570525 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
NIBRIN_BRCT_II
RTT107_BRCT_5
zf-C3HC4_2
zf-rbx1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
102570525
NCBI-ProteinID:
XP_006276496
LinkDB
All DBs
Position
Un
AA seq
794 aa
AA seq
DB search
MQAALRARSGNRPLSPVMERPSRVWHHTRAALEQLEAALRCSRCDHVLREPVCLGRCEHV
FCLDCVGDCVGTECPVCHMPAWVQDVQINRQLNNMIQLCSKLRQLLGTDPALPPDSAEDL
STSIRYNQDMGNKKQIKMWFSPRSRKIRCILNKNQEVTNADKISQDAPSVYDFSPSPSHE
KTSEQSKKPARGLTKKLKKKRLADFNKVWGIEKEKQKDGSRPEEKEASDEFSGKKVSFCS
QPLVASTPEPRSTEKTLGQESVKETNLDKNGSKSYLEMSTQVKPMEDNDRNKVACPAEDI
IESGVTTGKPLPGRNKETLLKCGRQQSRSPALSHSKKPRTSEKSTSRQSVTQQSPQNCCT
NMSLAAEDDSLVDISSPVYKHTGGTVSKPKNSSAFKEINSPLVSKAQTTPSTPNNWNQMA
VTQSPSLSKKYPDQSTTTKRNHKGETLLHIASIKGDLLAVELLLKNGADPNVKDHAGWTP
LHEACNHGHKKVVELLLQHGALVNTTGYHNDSPLHDAAKNGHVSIAELLLLHGASHNALN
IFGLRPVDYAETEKMKSVLMLPGKNESASFSQSVEQASPNRPKDGPVILLGSSLSSDKQK
LLSKLSAVLKARRCMAFNSTVTHVIVPDDSIRSTFKYMMAVLSGCWVLKFEWVKACLQSR
VREEEEKYEISGGPQKGRLNRIKLLPKLFDGCYFYFLGTFTCHQKNDLAELVKAGGGQIL
IRQPKPDSDVTQSINTVAYHAEPSSDQSFCTQYIIYDVSSKYKPDKVRQGKVWVAPSSWL
IDCVMSFQLLPVTM
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccgcgctccgggctcgctccggcaaccgccctctgtcgccagtcatggagcgg
cccagccgtgtctggcatcacacgcgcgccgccctggagcagctggaggccgcgctgcgc
tgctcccgctgtgaccacgtgctgagggagcccgtgtgcctgggtcggtgcgagcacgtc
ttctgccttgactgtgttggtgattgtgttggcacagaatgtccagtgtgtcacatgcca
gcatgggtacaagatgtacaaataaacaggcagttaaacaacatgatccagttgtgcagc
aaactacggcagctactgggcacagatccagctctcccaccagattctgcagaagacttg
tccacatcaataagatataatcaagatatgggaaataagaagcagataaaaatgtggttc
agtccacgcagtagaaagattagatgcatcttgaataagaatcaggaggtgaccaatgct
gataagatttcccaggatgcaccttctgtttatgatttctctccttccccttctcatgaa
aagacttctgagcaaagcaaaaaaccagcacggggattaacaaaaaagctgaagaagaaa
cgcctagcagacttcaacaaagtatggggtatagagaaggaaaagcagaaagatggcagt
agacctgaagagaaagaagcctcagatgaattcagtggaaaaaaggtgtccttttgcagt
cagccattagttgccagcaccccagaaccaaggagtactgaaaagacattaggacaagaa
tcagtaaaggaaactaacttggataaaaatggaagcaaatcatacttggaaatgtccaca
caagtaaaacctatggaagataacgacagaaataaagttgcatgtcctgcagaagatatc
attgagagtggtgttactacaggtaaacctctaccaggacgaaataaagagactctctta
aaatgtggaaggcagcaatcaagatcacctgctttgtctcattctaaaaaacctagaaca
agtgagaagagcaccagtaggcagtcggtcacccagcagtcgccacagaattgctgtact
aatatgtctctggctgctgaagatgacagtctagttgatatttcttctcctgtatataaa
cacacaggtggcaccgtatcaaaaccaaaaaactcatcagcttttaaagaaataaatagc
cctttggtatcaaaagcccagactactccatccactcctaataactggaatcaaatggca
gttacgcagagtccctctttgtcaaagaagtaccctgaccagagcacaactaccaaaaga
aatcataaaggagagactttgctccacattgcttctattaagggtgacttactagctgtt
gaacttctactgaaaaatggggcagaccctaatgttaaagaccatgctggatggacacca
ttgcatgaggcctgtaatcatgggcacaagaaagttgtggaactattactacagcatgga
gctctggtgaacactactgggtatcacaatgactctcctcttcatgatgctgccaagaat
ggtcatgtgagcattgctgagctgttgctcttgcatggagcctcccacaacgcgcttaat
atattcggtttgcggcctgtggactatgcagaaactgaaaaaatgaagtctgtgctgatg
ctaccagggaagaatgaatcagcctcatttagtcaatctgtagaacaagcaagcccaaac
cgccctaaagatggacctgttattctattggggagcagccttagttcagataaacagaaa
ttactgagcaaactgtcagcagttctgaaggctagaaggtgtatggcgtttaacagcaca
gtgactcacgttattgttcctgatgattcaatccgaagtactttcaaatatatgatggct
gttctgtctggatgttgggtcttgaaatttgaatgggtgaaagcatgtctgcaaagcaga
gttcgagaagaagaggagaaatatgaaatttctggtggtccacagaaaggcagactcaac
agaataaaactgctgcctaagttatttgatggttgctacttctattttctgggaactttc
acctgtcaccagaagaatgaccttgcagaactggttaaagcaggaggtggacaaatcctc
atcaggcagccaaagccagatagcgatgtgacacagagcatcaacacagtagcctaccat
gcagaaccgagttctgaccagagcttttgtactcagtatataatctatgatgtgtcttct
aaatataaaccagataaagttcgtcaaggaaaagtctgggtggccccctccagctggctg
atagattgtgtgatgtcatttcagctgttgcctgtcacaatgtga
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integrated database retrieval system
