Alligator mississippiensis (American alligator): 102570664
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Entry
102570664 CDS
T03087
Symbol
DDX50
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amj03009
]
102570664 (DDX50)
03036 Chromosome and associated proteins [BR:
amj03036
]
102570664 (DDX50)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102570664 (DDX50)
Ribosome biogenesis [BR:
amj03009
]
Eukaryotic type
Pre-60S particles
Helicases
102570664 (DDX50)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102570664 (DDX50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102570664
NCBI-ProteinID:
XP_006273542
LinkDB
All DBs
Position
Un
AA seq
733 aa
AA seq
DB search
MPETARLGRASGRSRSRSRSRSRSRGRSRSRSRGRGSSSGDESDRERRRMESDASPERGS
DRRRHKRDKKDEGYKYHDKSIKRKPHGLDSGQSEDDRDSPIPKRTKMGEKVNGDTEEGSP
ARRKRSSSLNNGMTHTKTQHHSSEGSSGEGDSEQEQELTTEQKDGAFSNFYISKETIELL
RARGVSYLFPVQVKTFYPIYDGKDVIAQAWTGTGKTFSFAIPLIEKLQGDTQERRRGRSP
KVLVLTPTRELANQVANDFKDITRKLTVACFYGGTSYNGQIDLIRSGIDILVGTPGRIKD
HLQNGKLELCKLKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSATCPNW
VYDVAKKYMKSRYEQIDLIGKRTQKAATTVEHLAIECHWTQKEAVIGDVIQVYSGSHGRT
IVFCETKKEANELALNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGL
DIPEVDLVVQGSPPKDVESYIHRSGRTGRAGRTGICICFYQPKEEYQLRYVEQKAGITFK
RVGVPTATDIIKASSKDAIRCLDSVPQTAIDYFKESARWLIEEKGAVEALAAALAHISGA
TSIEQRSLLNSDVGFVTMILQSSEEINNISYVWRGLREQLGIDIDRKVHRLCFIKGRMGV
CFDILASDLREIQGKWQDSKYWQLSVATKLPELIESQREGDRGSSDSRRRGRSSRHRSRH
RGHKRSHDRAYDR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaccgcccggctcggccgcgcgtccggccggagccggagccgaagccgaagc
cgaagccggagccgcggtcgcagccgcagtcgcagccgtggacgcggcagcagcagcggt
gatgagtcggatcgcgagcgccgccgcatggagagcgacgcgtccccggagcgcggcagc
gacaggaggcggcacaagagagataaaaaagatgaaggttataaataccatgataaatcc
atcaagaggaaaccccatggattggatagtgggcagtctgaagatgaccgtgattctcca
atacccaaaaggacaaaaatgggagaaaaggtgaatggtgatactgaggaaggaagccct
gcccgcaggaaaagatcttcatccctgaataatggcatgacccacacaaagacacagcat
cattccagtgaaggatccagtggagagggtgacagtgaacaagagcaggaattgactaca
gaacagaaagatggtgctttctccaatttttatatctctaaagagactattgaactcctt
cgagctcgaggtgtatcatacctgtttcctgtgcaagtaaagaccttctatcctatatat
gacggcaaagatgttatagctcaagcatggactggaactggaaaaacattctcttttgct
attcctttgattgaaaagcttcaaggagacacccaggagagaagaagaggccggagtcca
aaggtgctagttcttaccccaaccagagagctggcaaaccaggtagccaatgactttaag
gacatcacaaggaaactcactgttgcttgcttttatggaggaacttcgtataatgggcaa
attgacttaattagaagcggcattgacatcttggtagggaccccaggtcgaatcaaagac
caccttcagaatggcaagctggaactttgcaaacttaagcatgttgttttggatgaagtt
gaccaaatgttggacatgggatttgctgaacaagtggaggacattttacgagttgcgtac
aaaaaggattcagaagataaccctcagacgctcctgttttctgccacttgcccaaattgg
gtgtatgatgtggctaagaaatacatgaaatcccgatatgaacagattgacctaattggg
aagaggactcaaaaagcagctacgactgtagaacatttggctatagaatgccactggact
caaaaagaagcagttattggggatgtcattcaggtctacagtgggagtcatggacggacc
atagtcttttgtgagaccaaaaaggaggcaaatgaactggctcttaatgcctcaattaaa
caggattgccagtcattgcatggtgacattcctcagaaacaaagggagataacattgaaa
ggctttagaaatggtgcatttaaagttcttgttgcaaccaatgtggctgctcgtggctta
gatattcctgaagttgacctggttgtacaaggttcgccaccgaaggatgtagagtcctat
attcatcgttcaggacggacaggtcgagctggacggactgggatttgcatttgcttttat
cagccgaaggaagaatatcaactcagatatgtggaacagaaagcgggaattacttttaag
cgtgtgggggttcccactgcaacagatataataaaggcttccagcaaagatgcaatcagg
tgtctggattctgttcctcaaacggccattgactatttcaaagagtctgctcgatggctc
atagaagaaaagggagcagttgaagccctggctgcagcactagcccatatttctggagct
acttccattgaacagcgttctttactcaattcagatgtgggatttgttacaatgatactg
caaagctcagaagaaataaataatataagctatgtctggcgtggactgagagaacagctg
ggtattgatattgataggaaggtgcacagactgtgttttatcaaaggaaggatgggtgtg
tgttttgatattcttgcttcagatctacgagaaatacagggaaaatggcaggattcaaaa
tactggcagctatctgtagcaactaaattacctgagttgatagaaagccagcgagaagga
gacagaggatcctcagactccaggagacgaggtcgcagctctagacacagatcaagacac
agaggacataagcggagtcatgaccgagcatatgatcgttag
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integrated database retrieval system
