KEGG   Alligator mississippiensis (American alligator): 102570682
Entry
102570682         CDS       T03087                                 
Symbol
HLTF
Name
(RefSeq) helicase like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
amj  Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:amj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:amj04121]
    102570682 (HLTF)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102570682 (HLTF)
Enzymes [BR:amj01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102570682 (HLTF)
Ubiquitin system [BR:amj04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    102570682 (HLTF)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    102570682 (HLTF)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 DEAD zf-C3HC4_3 zf-RING_UBOX zf-RING_5 zf-RING_2 zf-ANAPC11 ResIII RING_XB3-XBAT31 HDA2-3 zf-C3HC4_4 zf-rbx1 ASPRs zf-RING_6 Prok-RING_4 zf-Nse
Other DBs
NCBI-GeneID: 102570682
NCBI-ProteinID: XP_014458311
UniProt: A0A151NAY5
LinkDB
Position
Un
AA seq 990 aa
MFAKNYGSSTGYGGNRTYSCSSSGDVDSALGFEDFLYTDDTSGTDEDLDLFVLFGNLRGN
VVGLRYYTGVVNNNEMVALQREPNNPYDKNAVKVNNVNGDQVGHIKKELAAPLAYIIDNK
LARVEGIVPYGAKNTFTMPVQMSFWGKEENKQAVLDRLKMHGFKMAPPLKSSELGFGSNL
FSGRAGPSYSAPGHTAVQMTTEQLKSEFDKLFEDLKEDDKTREIQGPEVIGTQLLPHQKQ
ALAWMVLRENNKELPPFWEERNNFFYNTLTNFAEKERPENVLGGILADDMGLGKTLTTIA
LILANFHNGKPLPVEKIKRDQLYKEFGATSVKNEGDLPFKDLNCNLESSTSSGKNETVQS
QLSSSYPKRTKAKKPKYSESSDSEESEEWLPQETRINTKKDLPTTRKRSKASCNFQEDTG
FASALAAPSPTLKKKAKKKGTSSIQLAKKDDSEEGQRTTLIICPLSVLSNWIDQLEQHIS
PDVHLNVYVYYGPDRSKDPALLSRQDIVLTTYNILASDYGSRGDSPLHKLKWLRVVLDEG
HTIRNPNALQTKAALNLEAQRRWILTGTPIQNSLKDLWSLLSFLKLKPFADREWWHRTIQ
RPVMMGDQGGLRRLQSLIKNITLRRTKMSKIKGKPVLELPERKVFIQHVTLTEEERQIYQ
AVKNEGKLAISRYFSEGTVLAHYADVLGVLLRLRQLCCHPHLCTNASSFSGTGVNNTPEE
LREKLVNKMKLVLSSGSDEECAVCLDSLTFPVITHCAHVFCKPCICEVIQSEQPNAKCPL
CRNELRLEHLIECPPEESDFESVKKSDREWIPSSKINALMHALIELRKENPVVKCLIVSQ
FTTFLSLIETPLRESGFVFTRLDGSMPQKKRVEAIQCFQSSQAGSPTIMLLSLKAGGVGL
NLTAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQAVIITKFVVKNSVEENMLSIQNKKRK
LAAGAFATKKPTASEVKQTKINEIKTLIDL
NT seq 2973 nt   +upstreamnt  +downstreamnt
atgttcgccaaaaactatggttcatctacaggctatggaggaaataggacttattcctgt
tcttcttctggtgatgttgattctgctcttgggtttgaagactttctgtatacagatgac
acttcagggacagatgaggatttagatttgtttgtcctgtttggaaatctgcgaggaaat
gtagttggattacgctactacacaggagttgttaacaataatgaaatggttgcacttcag
agggagcctaataacccttatgataaaaatgcagtaaaagtaaataatgtgaatggagac
caggtaggacacattaaaaaagaactggcagcacccttggcatacatcattgacaataaa
ctagcaagagtagaagggattgtcccttatggagcaaaaaatacctttactatgcccgta
caaatgagtttttggggaaaagaagaaaataagcaagctgttctagatcgactgaaaatg
catggctttaaaatggctcctcctctaaaaagttcagaacttggctttggatcaaacttg
ttttctggaagagctggcccaagctatagtgctccaggtcatactgctgtgcagatgaca
acggaacagcttaaaagcgagtttgataagctatttgaagatttgaaagaagatgataaa
acgcgtgaaatccaaggaccagaggttattggaacacagttacttccacatcagaaacaa
gctttagcttggatggttttgcgtgagaacaataaggagctgccaccattttgggaagaa
agaaacaacttcttttataatacacttacaaattttgctgaaaaggaaagaccagaaaat
gttcttggaggaatactggctgatgatatgggtttgggcaaaactctcacaaccattgcc
ctgattctcgccaactttcacaatggcaaacctcttcctgttgaaaagatcaaacgtgat
caattgtataaggaatttggtgcaactagcgtgaaaaatgaaggggacctacctttcaaa
gatctcaactgtaacttggagtccagtacttctagtggaaagaatgaaactgttcagtca
caactgtccagttcttatccaaaaagaacaaaagccaagaaacccaagtattcagaaagc
agtgattcggaagaatcagaagagtggctaccacaagaaacaagaatcaacactaaaaag
gatctccctacaaccaggaaaagaagtaaagcttcttgtaattttcaagaagatacaggc
tttgcatctgcccttgcagctccatctcctacattaaaaaagaaagcaaagaaaaaaggt
acttctagcattcagttggctaagaaagatgattctgaagaaggacaaagaacaacacta
atcatatgtccgctgtctgttttaagcaactggatcgaccagcttgaacaacatatcagc
cctgatgttcacttaaacgtttatgtttattatggacctgaccgtagcaaagacccagca
cttctttcaagacaagacattgtactgacaacctacaacattttagccagtgattatgga
agcagaggtgatagtccgttacacaaactcaaatggctcagagtggtattggatgagggg
cacactatacgaaatccaaatgctctacaaactaaagctgcattaaatctggaggcacag
agaagatggatactgacaggcactcctatccagaattccttaaaggatttgtggtcactt
ctctcctttctaaaactgaaaccatttgctgatcgagagtggtggcatagaacaattcag
cgccctgttatgatgggagatcaaggggggcttaggcgtttacagtccctaattaaaaat
attactcttagaagaactaaaatgagcaaaattaaagggaagccagttttggagttgcca
gaacgtaaagtatttattcagcatgttacacttacagaggaagagagacaaatctatcag
gctgtgaagaatgagggcaaacttgctattagcagatatttcagtgaaggaactgttctg
gcacattatgcagatgtccttggtgtcttattgagactgagacagctgtgttgtcatcct
cacctttgtacaaacgcatcttctttcagtggtacaggtgtaaataatactcctgaagaa
ttgcgtgagaaactagtaaataaaatgaagctggttctgagctctggatcagatgaagaa
tgtgcagtttgcttggattctctcacctttcctgtgataacacattgtgcacatgtgttt
tgtaaaccgtgtatatgtgaagtcatccaaagtgaacagccaaatgctaaatgccctctt
tgtaggaacgaacttcgactagagcatttgatagaatgtcctccggaggagtcagacttc
gagagcgtgaagaaaagtgatcgggaatggatacccagttcaaaaataaatgctttaatg
catgctttgatagaactaaggaaggagaatccagtggttaagtgtctgattgtttctcaa
tttacaactttcctgtctttaatagaaacaccgctgagagagtctggctttgtttttact
cgtttggatgggtccatgccccagaaaaaacgggtagaagcaattcagtgcttccaaagc
agccaagcaggatctccaaccataatgctgttatcactaaaagctggtggggttggacta
aacttgactgcagcttcacgagtgttcctaatggatccggcttggaatcctgcagcagaa
gaccagtgttttgacagatgtcacagacttggccagaagcaagctgttattatcaccaag
tttgttgtgaagaattcagtggaagaaaatatgctgagcatccaaaacaagaagaggaaa
ctggctgcaggagcctttgcaactaaaaagcctactgctagtgaagtgaaacaaaccaaa
attaatgaaattaagactctaattgacttataa

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