KEGG   Alligator mississippiensis (American alligator): 102570813
Entry
102570813         CDS       T03087                                 
Symbol
POLR2E
Name
(RefSeq) RNA polymerase II subunit E
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03020  RNA polymerase
amj03420  Nucleotide excision repair
amj04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102570813 (POLR2E)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102570813 (POLR2E)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    102570813 (POLR2E)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amj03021]
    102570813 (POLR2E)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102570813 (POLR2E)
Transcription machinery [BR:amj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     102570813 (POLR2E)
  RNA polymerase III system
   RNA polymerase III
     102570813 (POLR2E)
  RNA polymerase I system
   RNA polymerase I
     102570813 (POLR2E)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102570813 (POLR2E)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1
Other DBs
NCBI-GeneID: 102570813
NCBI-ProteinID: XP_014467034
LinkDB
Position
Un
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKGQYGDKPSEGRPRRADLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKLYCQRMQEENITRALIVVQQGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggacgacgaggaggagacgtaccgcctgtggaagatccgcaagaccatcatgcagctc
tgccacgaccgcggctacctggtgacgcaggacgagctggaccagacgctggacgagttc
aaggggcagtacggcgacaagcccagcgaggggaggccgaggcgcgccgacctcacggtg
ctggtggctcacaacgacgaccccaccgatcagatgttcgtcttcttccccgaggagccc
aaggtggggatcaagaccatcaagctgtactgccagaggatgcaggaggagaacatcacc
agagccctcatcgtggtgcagcagggcatgacgccgtccgcgaagcagtccctggtagac
atggctcccaagtacatcttggagcagttcctccagcaagagctgctgattaacatcact
gaacatgagctggttccagagcacgtggtcatgacaaaggaagaagtcactgagctgcta
gccagatataagctgagagagaaccagctgccaaggatacaggctggagatcccgtggcc
agatactttgggataaagcgagggcaggtggtcaagatcatacggcctagtgagacagca
ggtcgatacatcacctaccgactggtgcagtag

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