Alligator mississippiensis (American alligator): 102570943
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Entry
102570943 CDS
T03087
Symbol
CHD1
Name
(RefSeq) chromodomain helicase DNA binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102570943 (CHD1)
03036 Chromosome and associated proteins [BR:
amj03036
]
102570943 (CHD1)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102570943 (CHD1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
102570943 (CHD1)
SLIK complex
102570943 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
Motif
Other DBs
NCBI-GeneID:
102570943
NCBI-ProteinID:
XP_014452739
UniProt:
A0A151PIZ2
LinkDB
All DBs
Position
Un
AA seq
1812 aa
AA seq
DB search
MNGHSDEESARNSSGESSQSDDDSGSASGSGTGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDASKEKKQVQAKSPKVDGAEFWKSNPSILTVQRSAMLRKQQQQQQQKAASSDSG
SEEDSSSSDDSVDDSTSETKRKKHKDEDWQMSGSGSVSGTGSDSESREDREKSSCEESES
DYEPKNKVKSRKPPSRIKPKSGKKSVGQKKRQLDSSDDDDDDDEEEDDYDKRGSRRQATV
NISYKEAEEAKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRTGRKGATGAATTIYAVE
ADGDPNAGFDKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDLE
TKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPY
SECSWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEG
LELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNCLFHEHQLYGPFLLVVP
LSTLTSWQREIQIWASQMNAVVYLGDITSRNMIRTHEWMHLQTKRLKFNILLTTYEILLK
DKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLH
FIMPEKFSSWEDFEEEHGKGREVGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEM
SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDDEFYNKQE
ALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSI
KGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARA
HRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSST
PFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQ
FKVANFSNMDEDDIELEPERNSRNWEEIIPEVHRRRIEEEERQKELEEIYMLPRMRNCAK
QISFNGSEGRRSRNRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSY
KKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGQDRAGGRLGKVK
GPTFRISGVQVNAKLVISHEEELVPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDD
SNLLIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLA
RKEAQRLSGAGNSKRRKMRTKKNKVLKSAKMKEEVKSDSSPPASEKSDEEEDDYKDEISS
VKHPNKKIKTEKENEEKSESDIGVKKETEEKRETKEKENKRDLKREKREKEDKKELKEKE
VKEKRDNKIKESTQKEKEVKDEKTNEVKSESKDKTKKTLLADTPVHITASSEPVPISEES
EELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYT
NPDQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNIGSNVNTHVIRN
PDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKD
HRDWDHYKQDNRYYSDSKHRKLDDHRSRDHRSNLEGNLKDSRSHSDHRSHSDHRIHSDHR
STSDYGHHKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHK
STPEHTWSSRKT
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgcaagaaacagcagcggagaatcaagccaatca
gatgacgattctgggtcagcgtcaggttctggaactggttcaagctctgggagcagcagc
gatggaagtagcagccagtcaggtagcagcgactccgactctggttcagagtcaggaagt
cagtcagaatcagagtctgatgcatctaaggagaagaaacaagttcaggctaaatcacct
aaagttgatggagctgagttttggaaatcgaatccaagtattctaactgttcagagatca
gcaatgctcagaaagcagcagcagcaacagcagcaaaaagcagcttcatcagacagtggt
tcagaagaggattcatctagtagtgacgactctgtggatgactcaaccagcgaaaccaag
aggaaaaaacataaagatgaagactggcaaatgtctgggtcaggatcagtctctgggact
ggttcagattctgaatcaagggaagatagagaaaaaagcagctgtgaagagagtgaatct
gactatgagccaaaaaataaagtaaaaagcaggaaacctcccagcagaattaagccaaaa
agtggtaaaaagagtgtaggacagaaaaagaggcagcttgattcatctgatgatgatgac
gatgatgatgaggaggaggatgattatgataaacgaggatctcgtcgccaggcaacagtc
aacattagttacaaagaagctgaagaagcaaagacagattcagatgatttgctggaagtc
tgtggagaggatgttccacaacctgaagaagatgaatttgaaactatagaaaagtttatg
gatagtcgcactggacgaaaaggagcaactggtgctgcaactaccatctatgcagttgag
gcagatggtgatccaaatgcaggatttgacaaatcaaaggagccgggggaaattcaatat
ctgattaaatggaaaggctggtcccatatacataacacatgggagacagaagaaacttta
aagcaacagaatgtgaaaggaatgaagaaactggacaactataagaaaaaagatttagaa
acaaagcgatggctgaaaaatgcttctccagaagatgtggaatattataactgtcagcaa
gaacttacagatgatctgcataaacagtatcaaatagttgaaagaataattgctcattca
aatcagaagtcagcagcaggttatccagattattactgcaaatggcagggtctcccatat
tctgaatgtagctgggaagatggtgctctcattgccaaaaaatttcaggcacgtattgat
gagtattttagcagaaatcaatccaagaccactccttttaaggactgcaaggtattaaaa
cagagaccaaggtttgttgcactgaaaaagcagccatcatatattggagggcatgagggc
ttagagttgagagactatcagttaaatggactgaactggcttgctcactcttggtgcaag
gggaacagttgtattcttgcagatgaaatgggcctaggtaaaacaatacagacgatctcc
tttctgaactgcctgttccatgaacatcagttgtatggtcctttcttgctggtagtgcca
ctttccactttgacatcttggcaaagagaaattcagatatgggcttctcaaatgaatgct
gtggtttatttaggtgatataactagcagaaatatgataagaactcatgaatggatgcat
ctgcagaccaaacggttaaaatttaatatccttttgacaacttatgagattctgctaaag
gataagtcattccttggtggtctaaactgggcatttataggagtggatgaagctcatcgt
ttgaaaaatgatgactctcttctgtataaaaccttaatagactttaagtccaaccatcgt
cttcttatcactggaacccctctgcagaactctctcaaagagctttggtctttgcttcac
ttcatcatgccagaaaagttttcttcctgggaagattttgaagaggagcatggcaaaggg
agagaagtcggctatgcaagtcttcacaaagaacttgagccattcctgttgaggagagtt
aaaaaagatgtagaaaaatctttacctgctaaagttgaacagattttgaggatggagatg
agtgcattgcagaagcaatattacaagtggattttaaccaggaattataaagccctgagt
aaaggttcaaagggcagtacctcagggtttttgaatatcatgatggaactcaagaagtgt
tgtaaccattgctacctcattaaaccaccagatgatgatgaattctataataaacaggag
gccttacagcatttaattcgtagcagcgggaaactcatccttcttgacaagctactgatt
cgcctacgggaacgtggcaacagagttcttattttctctcagatggtgcggatgctggac
atcctagcagaatatttgaagtatcgtcagttcccctttcagagactagatggatcaata
aaaggggaattgaggaaacaagcactggatcattttaatgcagaaggatcagaggatttc
tgctttttactgtctactagagctggaggtctaggtatcaatttggcatctgctgacact
gtagttatatttgattctgactggaacccacagaatgatttgcaggcacaggcaagagct
catagaattgggcaaaagaaacaggtaaatatttatcggctagtcacaaagggatcagta
gaagaagatattctagagagagccaaaaagaagatggtgttggatcatttggtaattcag
agaatggacactacaggcaaaactgtactacatacaggttctactccttcaagctctact
ccttttaataaggaagagctgtcagctattttaaagtttggtgcagaggagctttttaaa
gaacctgaaggggaagaacaagagccccaggaaatggatatagatgaaatcttaaagagg
gctgaaactcgggaaaatgagccaggcccattaactgtaggagatgagttgctttcccag
tttaaggtggccaacttttcaaacatggatgaagatgatattgagttggagcctgaacga
aattcaaggaactgggaagaaatcattccagaggttcataggagaagaatagaggaggaa
gaaaggcagaaggaacttgaagaaatttacatgcttccaagaatgagaaactgtgctaaa
cagattagttttaatgggagtgaaggaagacgtagtcggaatagaagatactctggatct
gatagtgattctatctccgaaaggaaacgacccaaaaaacgtggaagaccacgaactatt
cctcgagagaatattaaaggatttagtgatgcagaaattaggcggtttatcaagagttac
aagaaatttggtggccctctggaaaggttggatgctatagctagagatgctgaattagtt
gataaatctgagacagaccttagacgattgggggagctcgtgcataatggatgcattaag
gctttaaaagacagttcttctggacaagatagagcaggaggcagacttgggaaagttaaa
ggcccaacattccgaatatcaggagtacaagtgaatgcaaaactggtcatctctcatgag
gaagagttggtaccattgcacaaatctattccttcagatccagaggaaaggaaaagatat
gtcatcccatgccacaccaaggcagctcattttgatatagattggggcaaagaagatgat
tctaatctgctaataggcatctatgaatatgggtatggcagctgggaaatgataaaaatg
gatcctgacctgagcttgacacagaagattctgccagatgatccagataagaaaccccag
gccaagcagttacagactcgtgcagactacctcattaaattactcaataaagatcttgca
aggaaggaagcacaaagactttctggtgcaggaaattcaaagaggaggaaaatgagaact
aagaagaataaagtgttaaaatctgcaaaaatgaaagaggaggtaaaaagtgactcttca
ccaccagcctcagaaaaatctgacgaagaagaagatgactataaggatgagatctcttca
gtgaaacatccaaataaaaaaataaaaacagaaaaagaaaatgaagaaaagtctgaatca
gatattggtgtaaagaaggaaacagaagaaaagagagagacaaaagaaaaggaaaataag
agggacctgaaaagggagaaaagagaaaaagaggataagaaagaattaaaagaaaaagaa
gtaaaagagaagagagataataaaataaaagagtccacacagaaagaaaaagaagtcaag
gatgaaaagacaaacgaagtcaaatctgaaagtaaagacaaaactaagaaaactctttta
gcagatactccagttcacattactgcaagtagtgagccagttcctatatcagaagaatct
gaagaactggatcagaagacattcagtgtatgtaaagaaagaatgaggcctgtcaaggca
gcactgaagcagctagacagaccagagaaaggcctttcagaaagggaacagctggagcat
actagacagtgtttgatcaaaattggggatcacatcactgagtgtctaaaagaatacaca
aatcctgatcaaattaaacaatggaggaaaaacttgtggattttcgtatctaagtttaca
gaatttgatgccagaaagctgcacaaactgtataaacatgcaatcaaaaaacgccaagaa
tctcagcaacacaatgaccagaatattggcagtaatgtgaatacacatgtgattagaaat
ccagatgttgaacgattgaaagagaatacaaaccatgatgacagcagcagggatagttat
tcctctgacagacatttatcacaatatcatgatcatcacaaagacagacatcagggagat
gcttacaaaaaaagtgactctaggaaaaggccctattctgccttcagcaatgggaaagat
cacagggattgggatcactacaaacaggataacagatactacagtgatagtaaacataga
aagctagatgaccacagaagtagagatcacaggtcaaatctggaaggaaacttaaaggac
agccggtctcattccgatcaccgttcccattcagaccacagaatacactcggatcaccga
tccacttcagattatggccatcataaatcatccagggattataggtaccactcagactgg
caaatggaccatagagcttccagtagtggccctaggtcaccactagatcagaggtctcct
tatggctcaagatctcccttaggacacagatctccatttgaacactcatccgaccacaaa
agtacaccagaacatacatggagtagccggaaaacataa
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integrated database retrieval system
