Alligator mississippiensis (American alligator): 102571642
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Entry
102571642 CDS
T03087
Symbol
XAB2
Name
(RefSeq) XPA binding protein 2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102571642 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102571642 (XAB2)
03041 Spliceosome [BR:
amj03041
]
102571642 (XAB2)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102571642 (XAB2)
Spliceosome [BR:
amj03041
]
Complex B
Other components
Prp19-related factors
102571642 (XAB2)
Complex C
102571642 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
RPN7
ATG1-like_MIT2
TPR_1
Motif
Other DBs
NCBI-GeneID:
102571642
NCBI-ProteinID:
XP_019346198
LinkDB
All DBs
Position
Un
AA seq
757 aa
AA seq
DB search
MPRIWLDYCQFLTEQCRVTRTRRTFDRALRALPITQHHRIWPLYLAFVRRHPLPETAVRV
YRRYLKLSPEGAEEYIEYLRSIDRLDEAALRLAAVVNDDKFVSKEGKSNYQLWHELCDLI
SQNPDKVKSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVQTVMT
VRDFSQVFDSYAQFEESMIAAKMETASELGKEDDDEVELELRLARFERLMLRRPLLLNSV
LLRQNPHNVHEWHKRVQLHAGNPQQIINTYTEAVRTVDPAKATGKPHTLWVSFAKFYEDN
GQLEDARTIFAKGTQVNFKQVDDLASVWCEAGEMELRHHNYDQALRLLRVCDHCLPGCGR
ATAMPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATP
QIVINYALFLEEHKYFEESFKAYERGIALFRWPNVADIWHTYLTKFIARYGGTKLERARD
LFEQALDGCPQKYAKTIYLLYAGLEEQHGLARHAMAVYERATRAVPPAEQYDMFNIYIKR
AAEIYGVTHTRPIYEKAIEVLSDEPARDMCLRFADMECRLGEIDRARAIYSYCSQICDPR
TTGPFWQTWKAFELRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVYSSATGTVSD
LAPGQSGLDDMKLLEQRAEQLAAEAERDQPRTKDQILFVRGKASRAELAQLSRQANPDEI
DIDDDLGDDGAGDDEPDEVPLEQQSVPSAVFGGLKDD
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcatctggctggactactgccagtttctgacggagcagtgccgtgtgacccgc
acgcgccgcaccttcgaccgggcgctacgggcgttgcccatcactcagcaccaccgcatc
tggccgctctacctggcctttgtgcgtcggcacccgctacctgagactgccgtgcgtgtc
taccgccgctacctcaagctgagcccagagggggcagaggagtacatcgagtacctgcgc
tccatcgaccgcctggatgaggctgccctgcgcctggcagccgtcgtcaatgatgacaag
ttcgtctctaaggagggcaagtccaactaccagttgtggcacgagctgtgtgacctgatc
tcgcagaaccccgacaaggtgaagtcactaaatgtgggggccatcattcgtgggggcctc
acacgcttcaccgaccagctgggcaagctgtggtgttccctggctgactactacatccgc
agcggccactttgagaaggcgcgggatgtgtacgaggaggcggtgcagacggtgatgacg
gtgcgggacttcagtcaggtctttgacagctatgcacagttcgaggaaagcatgattgct
gccaagatggagacagcctctgagctgggcaaggaggatgatgatgaggtggagctggag
ctgcgcctggcacgctttgagcggctgatgctgcgccggcccctgcttctcaacagtgtc
ctgctgcgccagaacccgcacaatgtgcacgaatggcacaagcgtgtgcagttgcatgct
gggaacccccagcagatcatcaacacttacacagaggctgtgcgcaccgtggaccctgcc
aaggccacggggaagccacacacgctctgggtctcctttgccaagttctatgaggacaat
gggcagcttgaagatgcccggacaatctttgccaagggcacacaggtgaacttcaagcag
gttgatgatctagccagtgtgtggtgcgaggctggcgagatggagctgcgtcaccacaac
tatgatcaggccctgcgcctgctccgggtctgtgaccactgcctgccagggtgtgggcga
gccactgccatgccagcccgcaaagctgagtacttcgactcttcggagcctgtccagaac
cgcgtctacaagtccctcaaagtgtggtccatgttggcggacctagaggagagcctgggc
accttcaagtctaccaaggcagtgtatgaccggatcctggacctgcgcatcgctaccccc
caaattgtcatcaactatgccctgttcctggaggagcacaaatactttgaggagagcttc
aaggcctacgagcgtggcattgcgttgttccgctggcccaatgtggctgacatctggcac
acctacctgaccaagttcattgcacgctatggcggcaccaagctggagcgtgcccgtgat
ctctttgagcaagcactggatggctgcccccagaagtatgctaagactatctatctgcta
tatgctgggctggaggagcagcatgggctggcgcgccatgccatggcagtgtacgagcgt
gccacacgggctgtgccccctgcagagcaatacgacatgttcaacatctacatcaagcgg
gcggcggagatctacggtgttacccacacccgccccatctatgagaaggccattgaggtg
ctgtcagacgagccagcacgggacatgtgcctgcgctttgctgacatggagtgccgtctg
ggcgagatcgatcgggcccgcgccatctactcctactgctcccagatctgtgacccccgt
acaacaggcccattctggcagacgtggaaggcctttgagttgcgccatggcaacgaggac
acgatccgggagatgctgcgcatccgccgcagcgtccaggccacctataacacgcaggtc
aacttcatggcctcgcagatgctcaaggtctacagcagcgccactggcactgtgtcggac
ctggcaccagggcagagtgggctggatgacatgaagctgctggagcagcgagctgagcag
ctggcggctgaagctgaacgtgaccagccccgcaccaaagaccagatcctctttgtcagg
gggaaggcatcgcgtgcagagctggcccagctgtcccgccaggccaaccctgatgagatc
gacatcgatgacgacctgggtgacgatggggctggtgacgatgagcccgacgaggtgcca
ctggagcaacagagtgtcccatccgctgtctttgggggcctgaaggatgactga
DBGET
integrated database retrieval system
