Alligator mississippiensis (American alligator): 102571645
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Entry
102571645 CDS
T03087
Symbol
TAF1B
Name
(RefSeq) TATA-box binding protein associated factor, RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102571645 (TAF1B)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
102571645 (TAF1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
zf_CCCH_5
Motif
Other DBs
NCBI-GeneID:
102571645
NCBI-ProteinID:
XP_006266350
UniProt:
A0A151N896
LinkDB
All DBs
Position
Un
AA seq
592 aa
AA seq
DB search
MDEEDTRDYNEPCVQCSDVNWGLTDEGKFYCKSCHNVIERTKEVLVSDVIPNTKIQSISK
GLRKRKKIDKGWEWYVCEGFQYILKKQAEALQKLGVCPRMKDEILCSFWRRYLQKSKQAY
CPRPVNDTPQELVVSDSATDVDSEPERVSSFDLSSFSGSDIDVQTERSFGQISSVDKTSE
TMSVHSGSIDGSSYLRKRRKENVRMSMPMTLSFCYMALLWLKEPMTLSDLLRFVAEGHIP
YINAFQYFPEEIKLYGLDLRIFRVESWPKYEDVHNKMLELATFLDLPRFPAITDSCFLHP
DMLCIKYLMEANLPDELHSWTCRVVKKTGVGEADFLTLDAENKSARKVNYDVISVAIIIV
VLKLLLLLNDQYEWVLSNFAEERNKKNKEGRLWFDFRKWYKVVKKSVDIEQKKLDEERAR
CLWKCEKPLFYSAKQKAVALKRRQMIQSLQRQFDALTDSPQVTEKQSPSSFQLSWDEENP
DGSCFHGHSLEGFLQEKCNLHRPMNPEYWLCTVKLCNKKICGHLAHYKEGDFSKSYQFIL
NLFSFLLRVDVSLIHEEVCLIEHKLFSARLHKSKKKSKPKKVEIPKGPGNTG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaggacacgagagattacaatgagccctgtgtacaatgttctgatgtaaac
tggggtcttaccgacgaaggcaaattttattgcaaatcttgtcacaatgttatagagaga
actaaagaggttttagtttctgatgttattcctaataccaagatccagtcaatctccaaa
ggattaagaaagaggaaaaaaattgataaaggctgggaatggtacgtttgtgaaggcttt
cagtacatactcaagaagcaagctgaagccctgcaaaaattaggggtgtgcccacggatg
aaggatgaaattctgtgcagtttttggagacgttaccttcagaagagcaaacaggcatat
tgccctagaccagttaatgacactccccaggaactggttgtatctgacagtgctactgat
gtggatagtgagccagagagagttagttcttttgacttgtcatctttctctggaagtgat
atagatgtacagacagaacgcagctttggacagatttcttcagttgacaagacctcagaa
accatgtctgtccactctgggtcgattgacggtagttcatatttacgtaagaggagaaaa
gaaaacgtgaggatgtcaatgccaatgacgctttcattctgttatatggcattactctgg
ctgaaagaaccaatgaccttgtcggatctcttaaggtttgttgctgaaggtcatattcct
tacataaatgcttttcagtattttccagaggagattaaattgtatggacttgatctcaga
atctttcgtgtggagtcttggccaaagtatgaagatgtacataacaagatgcttgaactt
gcaacgtttctagacttgcctcgctttccagctataaccgacagctgctttcttcatcca
gacatgttgtgcataaagtatttgatggaagccaacttacctgatgaattgcacagttgg
acttgcagagtggtaaaaaagactggtgttggagaagcagactttctgactcttgatgca
gagaataaatcagcaaggaaagtaaattatgatgttatctctgtagccatcatcatagtg
gtgctcaagttactgcttttactaaatgatcaatatgaatgggtactttcaaactttgct
gaagaaagaaacaaaaagaataaagaaggccgcctatggtttgatttcagaaagtggtac
aaggtagtaaagaaatctgtggatatagagcaaaagaaattggatgaagagcgtgccagg
tgtctgtggaaatgtgaaaagccactattctattcagccaagcaaaaagctgttgcttta
aagagaagacaaatgatacagagcttacaaagacagtttgacgcactgacagattcacct
caagttactgaaaagcaaagcccttcgagtttccagttaagctgggatgaagaaaaccca
gatggaagttgttttcatggacatagcctggagggatttttgcaagaaaaatgcaatttg
cacagacccatgaaccctgaatattggctttgtacagtcaaactatgtaacaaaaagata
tgtgggcatctggcacactataaagaaggagacttttcgaagagctaccagttcatccta
aacctcttctccttcctcctaagggtagatgtttctcttatccacgaggaggtgtgtttg
atagaacacaaacttttcagtgcaagacttcataagtcaaaaaaaaaatccaagcccaag
aaagtggaaattcctaaaggtcctggaaatacaggctaa
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