Alligator mississippiensis (American alligator): 102571940
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Entry
102571940 CDS
T03087
Symbol
BRIP1
Name
(RefSeq) BRCA1 interacting protein C-terminal helicase 1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03440
Homologous recombination
amj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102571940 (BRIP1)
03460 Fanconi anemia pathway
102571940 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amj03400
]
102571940 (BRIP1)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102571940 (BRIP1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102571940 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
102571940 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
102571940
NCBI-ProteinID:
XP_019348960
LinkDB
All DBs
Position
Un
AA seq
1269 aa
AA seq
DB search
MSSDISEYTIGGIKILFPCKAYPSQLAMMNAIVKGLNSRQHCLLESPTGSGKSLALLCSA
LSWQQSLYEKSLDESPCEKECKKPETPLPCLCRCHSQPGTNDTSADVNQGASCSFNNCKT
AGSVGSETPSSNKEHSAKATLSSKLSAKKRATLHVEENDDFQVDRKRIRSLETEQQMRKR
NSFAKGVQFVDALEVYQQKRNGELTVRLDNVASLSQKTSPILCTQCSCSSKENGKDASNT
KRKENGGQPLIPKIYFGTRTHKQIAQITRELRRTAYSGTRMTILSSRDHTCIHPRVSSSG
NRNEKCVELLEGKHGSSCSYYHSVHKLSEQHTLQFVHKKCQAWDIEELVSLGKKLRACPY
FAARELMSGADIVFCPYNYLLDPQIRESMEIKLKGQVVILDEAHNIEDCARESVSYSVTE
TQLRFAREELDSMVNNNIRRKDHEPLRAVCCSLANWLQQTSSQLTERGYETSCKVWTGKE
MLTILHYMGITNATFPILQKHFAAVLEKEEKVTRFNGGEELIEIPTVSSATQFVLNGLFM
VLAYLFKDNSRFADDYRVALQQTYVWTNETQLDISDRNGFFPQPKHKRSSRQKTPVHMLN
FWCLNPAVAFSDLSDNVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVISNSQVWVGT
IGAGPSGRKLCATFQHAETFEFQDEVGALLLSVCHTVGQGVLCFLPSYKLLDKLKDRWTH
TGLWSNLEMVKTVIAEPQGGGKGDFDELLKIYYDAIKHKGGKDGALLMAVCRGKVSEGLD
FSDENARAVITIGIPFPNVKDLQVELKRKYNDQHSKLRGLLPGSQWYEIQAYRALNQALG
RCIRHRKDWGALILVDDRFRSNPNKYISGLSKWIRQQIQHHDKFGNALESLGAFAKKNQK
ETDLSSQCNSESLHIPSCSKEMPSASLLEATLHLSPSVSFESQVQNVKLPEAHSPAAINT
SNPTASSQSSDVTATREKSVQTFGVESPAHKTQRKEKVTDSRLDKREIKKRNSWSSSDLM
KKYFSKPLTSTPLPANENKCTSKAKCNQVKSTTETSQPVVDGQQWQSSSLTEHIPSRPAS
KLEKCHSPVKKTEAATAMGNSGGQKLSTNEAIDLCAELSSVEGKVEPLNVDTEAEDEDDS
IYFTPELYDDRESEEQANKLLGQTCHNTGNQLEHGVSIVAEDLFDISTSNIVSTVGEMRH
NDPLGSGFHGVMQSDKSITSAVNDFANISSVREVEQIISQEMDTKTKKSKLSRSRNQGAS
PFLFSDTNP
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgacatatcagaatataccattggtggcataaagatcctctttccttgcaaa
gcttacccgtcccagcttgctatgatgaatgcaattgtaaaggggttaaattctaggcag
cactgtttgctggagagccctacaggaagtggtaaaagtttagccttgctttgttctgca
ttgtcatggcagcaatctttatatgagaagtcattggatgagtctccatgtgaaaaggag
tgcaaaaagccagagaccccattgccatgtctctgcagatgccattctcagccaggaaca
aatgacaccagtgcggatgtgaaccaaggtgcttcttgttccttcaataactgtaaaact
gcaggttctgttgggagtgagacgccatccagcaacaaagaacacagtgcaaaagccaca
ctctcttcaaaattatctgcaaagaaacgggcaactttacatgtagaggaaaatgatgat
tttcaagtagacaggaaaaggattcgctcattagaaaccgagcagcagatgagaaaacgt
aatagttttgcaaaaggagtgcagtttgttgatgctttagaagtttatcagcagaaaaga
aatggggaactgactgttcgtttagacaacgttgcttctttatctcagaaaacatctccc
atcctttgtactcagtgttcctgttcttcgaaagaaaatggtaaagatgctagtaataca
aagaggaaggaaaatggaggacagccactcatccccaaaatatattttggaactcgaaca
cacaagcaaatagctcagattactagagagctgcgaaggacggcatactctggcacccgt
atgacaattctttctagccgggatcatacttgcattcatccgagggtgtccagtagtggc
aacaggaacgaaaaatgtgtagaattgctggaaggaaaacatggcagctcctgttcttat
taccatagtgtccataaattaagtgagcaacatacgctacagttcgtacataagaagtgt
caggcttgggacatagaagaacttgtgagcctgggaaagaaactgcgtgcatgtccctat
tttgcagctcgagagctcatgtcgggggcagatattgtattttgtccttacaactacctc
ctagacccccagataagagagagcatggaaattaagctaaaaggccaggtagttatttta
gatgaagcccacaacattgaggactgtgcacgggagtcggttagttacagcgttacagaa
acccagctgagatttgctcgtgaagaactggattccatggtcaacaacaacatcagacgg
aaggatcatgagccgctgcgggctgtctgttgcagtctggcaaactggttacagcaaacc
tctagtcagcttacagaaagagggtatgaaacctcctgtaaagtttggactggaaaagaa
atgctcaccattttgcattacatgggaataaccaatgctacatttcccatcttacagaaa
cattttgctgccgtccttgaaaaggaagaaaaagtaacaaggttcaatggtggagaggag
cttattgagattcccactgtgagttctgccactcagtttgtgctaaatggactattcatg
gttcttgcgtatctttttaaagataacagcagatttgcagatgactacagagttgcttta
caacaaacatatgtttggacaaatgaaacccaacttgatatttcagatagaaatggcttc
tttccacaaccaaaacataagcggagttcaaggcagaaaactccagtccatatgcttaac
ttttggtgcttgaatccagctgtggccttttcagacttaagcgataatgttaggacaatt
gtcctaacatctggtacactctctccaatggactcattttcttcagaacttggtgtaaag
ttttctatccagcttgaggcaaatcatgttatttcaaactcacaggtttgggttggtacc
attggagcaggccccagcggtcggaagttatgtgccacattccaacatgcagagactttt
gaattccaggacgaagtgggagcacttctgctttcagtatgtcatactgttggccaaggg
gttttgtgctttctgccatcttacaagctgttggacaaattaaaagatcgctggacacac
actggcttatggagtaatctggagatggttaagacggtcattgcagagcctcaaggagga
ggcaagggtgactttgatgaactgctgaaaatatactatgacgcaataaagcataaaggc
ggaaaagatggagcactcctcatggctgtatgcagagggaaagttagtgaaggcctggat
ttctctgatgaaaatgcccgcgctgttataactataggtatcccatttccaaatgtgaag
gaccttcaggttgagctgaagaggaaatacaatgaccagcattcaaagttaagaggactt
ttaccaggtagccagtggtatgaaattcaagcttacagagctctcaaccaggctctgggc
aggtgtattcgacacaggaaggattggggtgctcttattttagttgatgaccgcttcagg
agtaatcctaataaatatataagtggattatcaaaatggattcgtcaacaaatccaacac
catgacaagtttggaaatgcgcttgaatccttgggtgcatttgctaaaaaaaatcagaaa
gaaactgatttatcatcccagtgtaatagtgaatctttgcatataccttcatgttcaaaa
gagatgccatcagcttccttattggaggcaactcttcatctgtcaccatctgtttctttt
gaaagtcaggtacaaaacgtgaagctcccagaagctcattcccctgcagctatcaacaca
agtaatcctacagcatccagtcagtcaagtgatgtcacggcaacaagggaaaaaagtgtt
cagacttttggtgtagaaagtcctgctcacaaaacgcaacggaaagaaaaagtgacagac
tccagactagacaagagagagattaagaagaggaatagttggagtagttctgacctgatg
aaaaagtacttcagtaagccgttgacttcaacacctctcccagcaaacgaaaataaatgc
acgtcgaaggctaagtgcaatcaagtaaaaagcactactgaaactagtcaaccagttgtt
gatgggcaacagtggcagtcatcatcacttacagaacatataccaagcagaccagcctca
aagttggaaaaatgtcattccccagtaaaaaagactgaggctgcaacagctatggggaat
tctggtggacagaaactttccactaatgaagccatagatctatgcgctgagttatcttca
gtagaagggaaagttgaacctcttaatgtagatacagaagcagaagatgaggatgatagt
atctatttcacacctgagctttatgatgacagagaatcggaggaacaggcaaacaaactc
ttaggtcaaacatgccataacactgggaatcagcttgaacatggagtcagcattgtagct
gaagatctttttgatatcagtacttcaaatatagtaagcacggttggagagatgagacat
aatgatcccttgggctcaggatttcatggagtaatgcagagtgacaagagtatcactagt
gcagttaatgattttgcaaacatttctagtgtaagggaagtggagcagataatatctcag
gaaatggacactaagacaaaaaaaagtaaactttccagatcacgaaaccaaggtgcgtct
cctttcctgttcagtgatactaacccataa
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integrated database retrieval system
