Alligator mississippiensis (American alligator): 102572232
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Entry
102572232 CDS
T03087
Symbol
ABCA1
Name
(RefSeq) ATP binding cassette subfamily A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj02010
ABC transporters
amj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
102572232 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102572232 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amj02000
]
102572232 (ABCA1)
Transporters [BR:
amj02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
102572232 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
102572232
NCBI-ProteinID:
XP_006261470
UniProt:
A0A151NEE1
LinkDB
All DBs
Position
Un
AA seq
2260 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTFQLLIEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGESPGVVGNFNRSIVSRLFSDAKRLLLYSQQDS
SIKDVQQFLGKLWKLGKSGSGLKLHDFLVDNETFSDFLHQNMSLPPFAVDEILDAEVNLQ
QVIMSGYQMRLKDLCNASKLSDFVTIHNQTVAAVSEGFICTLPKEKLHAADLAFHANIDL
LKPLLKRMSLESSLRDLSDATDTLIESLGKLVKELLSMKSWSDMRQEVMFLTNVNASSSS
AQIYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEDDVASFYDNSTTPYCNE
LMKNLESSPLSRIIWRALKPLLIGKVLYTPDTPATRQVMSEVNKTFQELGVFRDLGGMWD
EIGPKIWTFMESSQEMDLIRTLLKSRGLWDVHLRGSNWTVEDLSLFLAKRPEDVQLVNDS
TYTWMDAFNETDRAVQTISRFMECVNLDKLEPIATEVRLINKSMELLDERKFWAGIVFNE
IAPDSTELPPHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAGLLVLILKVGNLLPYSDPSVVFV
FLSLFAVVTILQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVSFSLKIFAS
LLSPVAFGFGCEYFALFEEQGVGIQWDNFFRSPLEEDSFSLTTSAAMMLFDTFLYVVMTW
YIESVFPGQYGIPRPWYFPFTKSYWFGEESEKRQYCHSDQKGPSEVCMEEEPTHLQLGVS
IQNLVKVYRDGKKVAVDGLTLNFYEGQISSFLGHNGAGKTTTMSILTGLFPPTSGTAFIL
GKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLTEKEVKEEMEQMAMDVG
LPHKLKAKTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQG
RTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLSS
CRNSSSTVSYLKKDDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIMKHVPEARLVEDIG
HELTYVLPYEAAREGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADDSGVDAET
SDGTLPARRNRRVFGDRQSCLRPFTEDDAFDPNDSDIDPESRETDLLSGMDGKGSYQMKG
WKLTQQQFVALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALMFSLIVPPFGKYPSLELQP
WMYDEQYTFISNDAPEDSGTQKLLDVLINEPGFGTRCMQGHSILDTPCIVGQKEWTTASV
PDAVRDILLNGNWSMENPSPSCECSNEKIKKMLPVCPPGAGGLPPPQREQNTADILQNLT
GRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGASSSLVLPPSHEVNDAIRQLKKI
LELAKGSSGDRFLNSLASFMKGLDTKNNVKVWFNNKGWHAIGSFLNVINNAILRANLRGG
KNPNAYGITAYNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERV
SKAKHLQFISGVKPVIYWLANFVWDMCNYVVPATLVIIIFICFQQKSYVSSSNLPVLALL
LFLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIND
ILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGV
VFFLITVLIQYRFFIKPRPVEAKLPPLNDEDEDVTRERQRIISGGGQSDILEIKELTKIY
RMKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTDVTGGEAFLKGNSILSKI
QEVHQNMGYCPQFDAISELLTGREHLELFALLRGVPEKEVCKVGDWAVRKLGLVKYGEKY
AGNYSGGNRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVLTS
HSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIIVRIAGANPDLTPVQDFFGL
AFPGSVLKEKHRNMLQYQLPSSPSSLARIFSVLSQNKKRLHIEDYSVSQTTLDQVFVNFA
KDQSDDDHTKDLSLHKHQTVVDVAKLNSFLQDEKVKESCV
NT seq
6783 nt
NT seq
+upstream
nt +downstream
nt
atggctttctggacacagctgggattgctgctatggaagaacttcacttaccggagaagg
caaacttttcagctgctgattgaagttgcctggcctctctttatcttctttatactgatc
tccgtaagactttcatatccgccctacgagcaacatgaatgtcactttccaaacaaggcc
atgccttcagcaggaaccttgccttgggtccaggggattatttgtaatgctaacaaccct
tgcttccgctacccaactcctggggaatcccctggcgttgtcggaaactttaaccggtcc
attgtttcccgcttgttctctgatgccaagaggttgctgttgtacagccagcaggacagc
agcataaaggatgttcagcagtttctgggaaaactttggaagcttggaaagtctggctca
gggttgaaactccatgattttctggttgacaatgagacgttctcagacttcctccatcaa
aatatgtccctgccaccatttgctgtggatgagatactggatgctgaggtcaacctccag
caggtcatcatgtctggctatcaaatgcggttgaaagatctatgcaatgcatcaaagctg
tctgatttcgtcacgatccacaatcagacagtagcagcggtcagcgaaggcttcatttgc
actctgcctaaggaaaagctccacgcagcagacctagcctttcatgctaatatagacctt
ttgaagcctctgctgaaaagaatgtctcttgagtcctccttgcgggacctttcagatgcc
acggatactttgatagagagtctcgggaagcttgttaaagagctgctgagcatgaagagc
tggagtgacatgaggcaggaggtgatgttcctgactaatgtgaatgcttcaagctcctct
gcccagatctaccaggctgtgtcaaggattgtgtgtggacatcctgaggggggagggctg
aagatcaagtctctcaattggtatgaggacaacaattacaaagccctgttcggaggcaac
agcactgaagatgacgtagctagcttctatgataattctacaaccccctactgcaatgag
ctgatgaagaacctggagtccagtccactttcccgaattatttggagggctctgaaacct
ttgctgattgggaaggtcttgtacactcctgacactccagccacaaggcaggtcatgtct
gaggtgaacaagacattccaggagctgggtgtgttccgtgaccttggaggcatgtgggat
gagataggccccaagatttggacgttcatggaaagcagccaggagatggatctgatccgg
acgctgctgaagagtagaggcctctgggacgtgcacttgcgtggctccaattggacagtt
gaagacctttccctcttcttggcaaagagacctgaggacgttcagctggtgaatgactcg
acctacacctggatggatgccttcaatgagactgaccgggctgtccagacgatatcccgc
ttcatggagtgtgttaatctggacaaactggagcctatagccacagaagtgcggctgata
aataagtctatggagctgctggacgagaggaaattctgggctggtattgtcttcaatgaa
attgctccagacagcacagagctgccaccacatgtcaagtacaaaatacggatggacata
gacaatgtagaaaggaccaacaagattaaggatgggtactgggaccctggtccccgcgct
gacccctttgaagacatgcgctatgtctggggaggctttgcctacctgcaggatgtagtg
gagcaggcaatcatcagggtgcagacgggcacagagaagaagaccggtgtctatgtgcag
cagatgccctacccatgttatgtggatgatattttcctgcgtgtcatgagccgctcgatg
cctctcttcatgaccctggcgtggatctactcagtggctgtgatcatcaaggggattgtg
tatgagaaagaagcccgcctgaaggagaccatgaggatcatgggtctggacaatggcatc
ctctggctcagttggttcattagcagcctcatccccctccttatgagtgctgggctgctg
gtgctgatcttgaaggtgggaaacctactgccatacagtgaccccagtgtggtgttcgtc
ttcctctcgctctttgctgtggtgaccatcttgcagtgcttcctcatcagcactatattc
tcccgggccaacctcgcagcagcctgcggtggaatcatctacttcaccctctacctgccc
tacgtgctgtgtgttgcctggcaggactacgtgagcttctctctcaaaatctttgctagt
ttgctgtccccagtagcctttgggtttggctgcgagtactttgcactgtttgaggagcag
ggagttggcatccagtgggacaacttcttcagaagccccctggaagaagatagcttcagc
ctcaccacctctgctgccatgatgctttttgacacattcctttatgtggttatgacttgg
tacattgagtctgtcttcccaggccagtatggaattcccaggccctggtacttccccttc
acaaagtcctattggtttggtgaagaatcggagaagaggcagtactgccattctgatcag
aagggcccttcagaggtttgcatggaggaagaacccactcatctccaacttggggtgtct
attcaaaacctggtgaaggtttatcgcgatggcaagaaagtggctgtagatgggctcacc
ctgaatttctatgaagggcaaatctcctctttcctaggacataatggagctgggaaaacc
accactatgtctatcttgactggcttatttcctccaacttcaggcacagccttcatcttg
ggcaaagatatccgctctgagctcagcaccatcaggcagaacctgggtgtctgtccccag
cacaatgtgctgtttgacttactgacggtagaagagcacatctggttctatgcacgcctg
aaaggcctgacagaaaaggaagtgaaagaggagatggaacagatggcgatggacgttggt
ttgcctcacaaactcaaggccaagacgagcaaactctctggtggcatgcagaggaagctg
tcggtagccctggccttcgtaggtggctcaaaggtggtcattctagatgaaccaacagct
ggcgttgacccatactctcgcagaggcatatgggagctgctgctgaaatatcgacaaggc
cgcacaatcattctctccacacaccacatggatgaagcagacatccttggggaccgcatt
gccataatttctcatggcaaactgtgctgcgttggctcttccctgttcctaaagaaccag
ctgggaacaggctattatctcaccctggtcaagaaggatgtagactcttcactgagttcc
tgtagaaacagcagcagcactgtgtcttacctgaaaaaggatgacagcgtgtcccaaagc
agctctgatgctgggcttggcagtgaccatgagagtgacaccctgacaatcgatgtgtct
gctatttccaacctcattatgaaacacgttcctgaggccaggctggtggaggacattggc
catgaacttacttatgtcttgccgtatgaagctgctagagagggagcctttgtagagctg
ttccatgagattgatgaccgcctctctgacctgggtatttcaagttatggcatctctgaa
actactttggaggagatctttctcaaagtggctgatgacagtggggtggatgcagagaca
tcagatggtacattacctgcaagaaggaataggcgggtctttggagacagacagagctgc
cttcgtcctttcacagaagacgatgcttttgaccccaatgattcagacatagacccagaa
tccagagagacagacctgctcagcgggatggatggcaaaggctcctaccagatgaaaggc
tggaagctcacccagcaacaatttgttgctctgctgtggaagaggctgctcatcgccaag
cgcagccggaagggcttctttgcccagattgtgttgccagctgtcttcgtgtgcattgcc
ctcatgttcagcctgattgtccctccctttggcaaataccccagcctggagctgcagccc
tggatgtatgacgagcagtacacctttatcagtaacgatgccccagaggattcaggcacg
cagaagcttttggatgttcttatcaatgagcctggctttggaactcgctgtatgcaagga
cactccattctagacactccttgcatcgttgggcagaaggagtggaccacagcttcagtc
cctgatgcagtcagggacattctcctgaatgggaactggagcatggagaacccctcccct
tcctgtgagtgcagcaatgagaaaatcaagaagatgttgcctgtgtgccctcctggtgca
ggggggctcccccctccgcagagagagcaaaacactgctgacatcctacagaacctgaca
ggccggaacatatcggactatctggtgaagacctacgcacagatcattgggaaaagcttg
aagaataagatctgggtgaatgaattcaggtacggaggattttccctgggtgccagcagc
tcccttgtgcttcctccaagccatgaagtaaatgatgccatcaggcagttgaagaagatc
ttggagcttgccaaggggagctctggagatcggtttctaaatagcttggcaagcttcatg
aaaggactggacacaaaaaacaatgtcaaggtgtggttcaacaacaagggctggcatgcc
atcggctccttcctgaatgtgatcaacaatgccatcctcagggccaacctccgggggggc
aagaaccccaatgcttatggcatcaccgcctacaaccacccgctgaacctcacgaagcag
caactctctgaagtggcactgatgaccacatcagtggacgttttagtctccatctgcgtg
atcttcgccatgtcctttgtccctgccagcttcgtagttttcctgatccaggagcgcgtc
agcaaagccaagcacctgcagttcataagtggggtgaagccagtgatctactggctggca
aactttgtctgggacatgtgcaactatgtggttcccgctacactggtcatcatcatcttc
atctgcttccagcagaagtcctatgtctcctcttccaacctgcccgtgctggcccttctg
ctcttcctctatgggtggtccatcaccccactgatgtaccctgcctccttcgtgttcaag
atccccagcactgcctacgtagtgctgaccagtgtgaacctcttcattggcatcaatggc
agtgtggccacttttgtactcgagcttttcaccaataataagctgaacaacatcaatgac
atcctcaagtccgtcttcctcatcttcccccacttctgcctgggtcggggcctcattgac
atggtgaaaaaccaggccatggcagatgctttagaaaggtttggtgagaatcgctttgtg
tcccctctgtcctgggatctggtgggacgcaacctctttgccatggctgttgaaggtgtg
gtcttcttcctcatcactgtgcttatccagtacaggttcttcatcaagccaaggccggtt
gaagccaagcttccccctctgaatgatgaggatgaggatgtgaccagggagaggcagagg
ataattagcggtggagggcagagcgacatcctcgaaatcaaggagctgaccaagatttat
agaatgaagcgaaaaccagcggtggacaggatctgtgttggaatcccccctggagagtgc
tttgggctcctgggagtgaacggtgctggcaagtcatcaactttcaagatgctaactgga
gacacggatgtgacggggggagaagcttttctcaagggaaacagcatcctgtctaagatc
caagaagtccatcagaacatgggctactgccctcagtttgatgctattagcgagctgctg
acaggaagagagcatctggagttatttgcactcttaagaggcgttccggagaaagaggtt
tgcaaggtcggggactgggcagttcgtaaactgggtcttgtaaaatatggagaaaaatat
gctgggaattacagtggagggaaccggcgcaagctgtctacggccattgccctgattgga
gggcctccggtggtattcctggatgagccaaccacaggaatggatcccaaagcacgacgt
ttcctttggaattgtgctctgagtgtcatcaaggagggcagatcggtggtgctgacatct
cacagcatggaagaatgtgaagccctgtgtactcgaatggcgataatggtcaatgggcgg
ttcaggtgtctgggaagcgtccagcatctgaagaacaggtttggagatggctacaccatc
attgtgcggatagcgggagcaaaccccgacctgacgcctgtgcaggacttctttgggctt
gcattcccaggcagcgtcctgaaagagaagcatcgaaacatgcttcagtaccagctcccg
tcttcgccatcctccctggccaggatattcagcgtcttgtctcagaacaagaagagactc
cacatagaagactactccgtttctcagactacacttgaccaagtatttgtaaactttgcc
aaggaccaaagtgatgatgaccacacaaaggacttgtcattgcacaaacaccagactgtt
gtggacgttgcaaagctgaattcctttctgcaagatgagaaggtgaaagaaagttgtgtg
tga
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integrated database retrieval system
