Alligator mississippiensis (American alligator): 102572235
Help
Entry
102572235 CDS
T03087
Symbol
DDX1
Name
(RefSeq) DEAD-box helicase 1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amj03041
]
102572235 (DDX1)
03016 Transfer RNA biogenesis [BR:
amj03016
]
102572235 (DDX1)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102572235 (DDX1)
Spliceosome [BR:
amj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102572235 (DDX1)
Transfer RNA biogenesis [BR:
amj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102572235 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
102572235
NCBI-ProteinID:
XP_006262122
UniProt:
A0A151N8W6
LinkDB
All DBs
Position
Un
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGFSTMQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDLDKGQIKFSKNGKDLGLAFEIPPHVRNQALFASCVLKNAELKF
NFGEDELKFPPKDGFIALCKAPDGDVVKSQHTGSAQVAQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEHGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDKMWERLGRNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLELYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKDEGGCTIWYNEMQLLG
EIEEHLNCTISQVEPDIKVPADDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctctgaaatgggtgtgatgccagaaatagctcaagctgtagaagagatg
gactggcttcttcccacagatattcaagctgagtctatccccttaattctaggaggtggt
gatgtccttatggctgcagaaacggggagtggaaagactggtgctttcagcattccagtt
atccagattgtttatgaaacactgaaggaccagcaagaaggcaagaaggggaaagcaacc
atcaaaactggtggggctgtgctcaacaaatggcaaatgaacccatatgatagaggttca
gcttttgcaattggttctgatggtctctgttgccaaagtagagaagtaaaggaatggcat
gggtgcagagcaaccagaggagtgactaaaggaaaatactattacgaagtatcctgtcat
gaccagggcttgtgcagagttggtttctccaccatgcaggcttcattagatctaggcact
gacaaatatggctttgggtttggtggaactggaaagaagtctcataacaaacagtttgac
agttatggtgaggaattcaccatgcatgatacaattggatgctatctagatctagataaa
gggcaaataaagttttccaaaaatggaaaagaccttggccttgcatttgaaatcccacca
catgtaaggaaccaagcactctttgcatcctgtgttttgaagaatgctgaactgaaattc
aattttggtgaagatgaattgaaatttccaccaaaagatggttttattgctctttgcaaa
gctcctgatggtgatgtggtaaaatcccagcacacaggaagtgcacaggtggctcaaaca
cagaaccttcctaatgctcctaaagcattaattgtggaaccatccagagagttagcagag
caaactctgaacaatgtgaaacaattcaaaaaatatgtagataatcccaaattaagggaa
ctgttgattattggcggtgttgctgcaagagatcagctctctgtgttggagcacggtgta
gacatagttgtgggaacccctggaagactggatgaccttgtgtcaactggaaagcttaat
ttatctcaagttagattcctggttcttgatgaagctgatggcctcctccttcaaggttat
tcagattttataaacaggatccacagtcagattccccagataacttcagatggaaagaga
ctgcaggtgattgtgtgttctgcaactttacattcctttgatgtaaagaaactgtctgag
aagataatgcattttcccacctgggttgatttaaaaggagaagactctgtcccagaaact
gtgcaccatgtagttgtacctgtgaatcccaaaaatgacaaaatgtgggaaagacttggc
aggaatcatatcaggactgatgaggtacatgcaaaagataatacacgacctggggctaac
agtgcagaaatgtggtctgaagctattaaaatcctaaagggagagtatgctgttcgagca
atcaaggaacacaagatggatcaagcaattattttctgccgaactaaaatagactgtgat
aacttggagctgtacttcatccagcaaggaggaggcccagataggaagggacatcagttc
tcgtgtgtgtgtttgcatggtgacagaaagcctcaagaaagaaaacaaaacttggaaaga
tttaagagaggagatgtcaggttcttgatctgcactgacgtagctgctagaggaattgat
attcatggtgttccttatgttatcaatgtcactcttcctgatgaaaaacaaaactatgtt
catcgaattggccgagttggcagagctgaaaggatgggtctggcaatctctcttgtggca
acagaaaaagagaaggtttggtatcacgtttgtagcagccgtggaaagggatgctataat
actagactgaaggacgaaggaggttgtaccatatggtacaatgagatgcagctcttggga
gagattgaagagcatctgaactgtactatttcccaagttgagccagatattaaagtacca
gcagacgactttgatgggaaggttacatatggacaaaaaagagctttgggcggtggtctt
tataaaggccatgtggatattttggcacctacagtgcaagagttggctgcccttgaaaaa
gaagcgcagacgtctttcttgcatcttggctaccttcctaaccagctgttcagaacattc
tga
DBGET
integrated database retrieval system
