Alligator mississippiensis (American alligator): 102572238
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Entry
102572238 CDS
T03087
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102572238 (HTT)
04131 Membrane trafficking [BR:
amj04131
]
102572238 (HTT)
03029 Mitochondrial biogenesis [BR:
amj03029
]
102572238 (HTT)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102572238 (HTT)
Membrane trafficking [BR:
amj04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
102572238 (HTT)
Mitochondrial biogenesis [BR:
amj03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
102572238 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
HEAT_GCN1
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
102572238
NCBI-ProteinID:
XP_006262709
LinkDB
All DBs
Position
Un
AA seq
3095 aa
AA seq
DB search
MATMEKLMKAFESLRSFQQQQGPATVPEEPLHRPKKELSTTKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVIKALMDSSLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDEHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKEAEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPDLLHALTTLGGIAQVSVSKDESSSR
SRSGSIVELIAGGGSSCSPVLARKQKGKVLLGEEEGLEDDPETRSEVSTTTFTASMKSEI
TSELASSSGVSTAGSVVSSATDPTGHDIITEQPRSQHTLQSDSVDLSSCDLTSTATEGEE
DDVLSRSSSQISAVQSDPTMDLNDGTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLEGA
ESQYSGMQIGQLQDEEDEAANLLPDESSEPFRNSSFALQQPRLLKNMGHSRQPSDGSVDR
FASKDEALEPGDHENKPSRIKGDIGHYTDGNSAPLVHCVRLLSASFLLTGEKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLETMGEEYEEQYVSDILNYIDHGDPQVR
GATAILCGTIVNSILIKSRFDVENWIAVVRSSTGNLFSLVDCIPLLQKTLKDESSVTCKL
ACAAVRHCIMSLCSGSYSELGLQLITDLLTLRNSSYWLVRTELLETLAEIDFRLVSFLEG
KTDNLHRGVHHYIGLLKLQDRVLNNVVISLLGDEDPRVRHIAAASLMRLVPKLFYSCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDVTMENNLSRV
VSAISHALTTSTTRALTFGCCEALYLLSTTFPVCTWSVGWHCGVSQMSPSEESRKSCTIG
MAGMVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWTTEEDANTGAAKQEES
WPALGDRTLVTLVEQLFSHLLKVINICAHVMDDVTPGPAIKAALPSLTNPPSLSPIRRKG
KERDSVEQTSVPMSPKKGSETNPAARQTDTPGPAPASKSSSLGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNPNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREP
MMATVCVQQLLKTLFGTNLASQYDGLSSNPSKSQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSISSVTKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAIDRLRHGENVSTPED
QFEVKQAKYMPEETFSRFLLQLVGILLEDIVHKQLKVDMNEQQHTFYCQELGTLLMCLIH
IFKSGTFRRITAAATRLFTGDGSDGSFYTLESLSGLVQAMIPTHPSLVLLWCQILLLVNY
TNYSWWSEVHQTPKRHSLSSTKLLSPQISGDSDESDSESKLCMCNREIVRRGALILFCDY
VCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLS
TPTTLKKTLQCLEGIHLSQSGAVLMLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQ
NSVAQLPVEELDRIQEYLQNSGLGARHQRLYSLLDRFRLTVAPDTNSPSPLVTLHPLDGE
NRPALENLTPDKDWYVSLVRSQCCVRSDSALLEGAELVNRIPQPELNSFMTTKEFNLSLL
SPCLSLGMNEMSGDQKTSLFETARRVTLDHVSTIVQKLPANHQVFQPLQPIETSAYWNKL
SDIFGDVLVYQSVMTLCRALAQYLLLLSKLPACLRIPPDTGSDILKFVVMSLEALSWHLI
HEQVPLSTDIQAVLDCCCLTLQQPALWNSLASAVYVTHACSLINCVRFLIEAVAVKPGDQ
LLSPERKKNTSKIVGEDEVDSNDQKMKHVTKACEMVAELVECLQTVLALGHMRNSNIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIFK
EFIYRINTLGWTSRTQFEETWATLLGVLVTQPIVMDQEESQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVVRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPATTAALISHEKLLLQINTERELGNMDYKLGQVSIHSVWLGNN
ITPLREEEWDEDEDEENDLPAPSSPPTSPINSRKHRAGVDIHSCSQFLLELYSQWILPSN
PSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLVPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRGVAHCVSVHNQQHILVMCAAAFYLIENYPLDVGPEFSSGIIQMCVIMVSGND
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVHSPHRAMAALGLMLTCMY
TGKEKISPSRATDANPTAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNLFCLVAIDFYRHQIDEEL
DRRAFQSVFEVVASPGSPYHCLLTCLQNVHKITAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccactatggagaagctgatgaaggccttcgagtcgctgcgctccttccagcagcag
cagggcccggccaccgtccccgaggagccgctgcacaggccaaagaaagaactttcaact
accaagaaagatcgagtgaatcactgcttgacgatatgtgaaaatatagttgctcaatct
ttaagaaattctccagaatttcagaaactgttgggaattgcaatggaactctttcttctc
tgcagtgatgatgcagagtctgatgtcaggatggttgctgatgagtgtctcaataaagtt
ataaaagctttgatggattctagtcttccgaggttacagttggaactctacaaagagatt
aaaaagaatggtgcttcccgaagtctacgagctgcactctggcgatttgctgagcttgct
catctggttaggcctcagaagtgcaggccatatttagtgaacctgttgccatgtttaaca
agaataagtaagcggcctgaagaatccgtacaagagacattagctgcagcgattccaaaa
atcatggctgcttttggcaactttgcaaatgacaatgaaattaaggttttattgaaggcc
ttcatagctaatcttaaatccagttctcctaccatccgtcggacagcggcaggatcagca
gtgagcatctgccaacattcacgaagaacgcaatatttttatgcctggctattgaatgta
cttttaggtttgttggttcctgtagaagatgagcatcccactcttttaattcttggtgta
ttactcacgcttagatatctcatacctttactgcagcagcaagtaaaggatactagcctg
aaaggtagctttggtgtaacacgtaaagaagcagagatttcgccttcaccagaacagctt
atacaggtttatgaattgactttgcattacactcagcatcaggaccacaatgttgtgact
ggagctttagaactattgcagcaactttttagaacaccccctcctgatctcctccacgcc
ctgaccactttgggaggtattgcgcaggtcagtgtatccaaagatgagtctagcagcagg
agccgcagcgggagcatagtggaacttatagctggagggggttcttcatgcagccctgtt
cttgcaagaaagcaaaaaggtaaagtgcttctaggagaagaagaaggtttggaggatgat
cctgaaacacggtctgaggtcagcaccacaacatttactgcctctatgaagagtgaaata
accagtgaattggcttcttcatcaggtgtatcaacagctgggtcagtagtaagttctgcc
actgatcccactggacatgatatcatcactgaacagccacgttcacagcatactttgcaa
tcagactctgtagacttgtccagctgtgatttgaccagtacagctactgaaggggaagag
gatgacgtgcttagccgaagttccagccaaatcagtgctgtgcagtcagaccccactatg
gatttaaatgatggcacacaggcttcctcaccagttagtgatagctctcaaactactaca
gaaggcccagattcagctgtgaccccttcggacagttctgaaattgttctagaaggggct
gaaagccagtattctggaatgcagattggacagctgcaggatgaggaagatgaggctgca
aaccttctcccagatgaatcttcggagcctttcagaaattcatcctttgcccttcagcaa
ccccgcttattgaaaaacatgggccatagcaggcagccttctgatggtagtgttgataga
tttgcatcaaaagatgaagcactggagcctggtgatcatgagaataagccttctagaata
aagggtgacataggtcactacacagatggaaattctgctcctcttgttcattgtgttcga
cttttatctgcttcttttctacttactggagagaagggtgctttagttcctgatagggat
gtaagagtcagtgtgaaagccttggctgttagctgtgttggtgcagctgttgcgctccat
cctgaatctttcttcagcaagctgtataagacacctttggaaactatgggagaagagtat
gaagagcagtacgtgtcagatattttgaactatattgaccatggagatccccaagttaga
ggagctactgccattctctgtggaacaattgtcaactctattctcattaagtcacgcttt
gatgtggaaaactggatagcagttgtcagaagttcaacaggaaatctcttttctctggta
gactgtatacctctgttacagaaaacgctgaaagatgaatcctcggttacatgcaaactg
gcttgtgcagctgtgaggcattgcattatgagcttatgcagcggcagttacagtgaacta
ggcttacagttgatcaccgacctccttacactgaggaatagttcctattggctagtaagg
acagaactcctggaaactcttgctgagattgatttccggttagtcagctttttggaagga
aaaacagataatttgcatagaggagttcatcattatattggtctgttgaaactgcaggat
agagtgctcaataatgttgtaatctctctgcttggagatgaagacccaagggtgcgacac
atagctgcagcttctttaatgaggcttgttccaaagctgttttatagctgtgaccaagga
caggctgatccagtagtggcagtagcaagggaccaaagcagtgtctacctgaaacttctg
atgcatgagactcagcctccatctcactttgcagtgagcactatcaccagaacgtacaga
ggttacaatatgctgcaaagtccaacagatgtcactatggaaaacaacctttccagggtt
gtctctgcaatttcccatgcattgacaacatcaactacaagagcgcttacattcggctgt
tgtgaagctttgtatcttctctccacaacatttccagtctgcacctggagtgtaggatgg
cactgtggcgtttcccagatgagtccttcagaggaatctcggaagagctgtaccattgga
atggctggtatggttctgtctcttctttcatctgcctggttcccgctggatctttctgca
caccaagatgccttgattttgacaggaaacttgcttgcagctagtgctcccaagtgtttg
aaaaacccttggactactgaagaagatgctaatacaggagctgctaaacaagaggagtcc
tggccagctttgggtgaccgaactcttgtaactttggtagaacagctgttttctcacttg
ctgaaagtcattaatatttgtgctcatgtaatggatgatgttactcctggcccagcaata
aaggcagcattaccttctctcacaaacccaccttctctaagtccaattcggcggaaaggg
aaagagagagattcagttgaacagacatctgtaccaatgagccctaaaaagggtagtgaa
actaatccagctgctaggcaaactgatactccaggacctgctccagcaagcaaatcatca
tcgctgggcagtttctatcatcttccatcatatctcaagttatatgatgtcttaaaagct
acccatgctaactataaggtcacactggatcttcagaaccctaatgaaaagtttggatgt
ttcctgcgatctgctttggatgtcctctctcaaattttggaacttgcaactcttcaagac
attgggaagtgtgttgaagagattttggggtatttgaaatcctgcttcagtagagaacca
atgatggcaacagtttgcgtgcagcaattgctgaagactttatttgggacaaacttggca
tctcaatacgatggcttgtcttccaaccccagcaaatctcaaggcaaagctcagcgctta
ggctcttcaaatttaaggcctggcctttatcattattgcttcatggcaccgtatacacac
tttacgcaggcacttgctgatgctagtctaaggaacatggtacaggctgagcaggaacat
gatgcctcaggatggtttgatgtactgcagaaagtttcaacacaactgaaaactagcatt
tcaagtgtaacaaaacatcgtgctgacaagaatgctattcacaatcacatccgcttattt
gaacctcttgtcataaaagcgttaaagcagtacactacaacaacatctgtacagctgcag
aggcaggttttagacctgcttgcacaactcgttcaactacgggttaactactgtcttcta
gattcagatcaggtgttcattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaggcaattattcctaatatttttttcttcttggtattattgtct
tatgagcgatatcactccaagcagataataggaattccaaagatcattcagctatgtgat
ggtatcatggccagtggaaggaaagctgttacacatgctataccagctctgcaacccatt
gtccatgatctctttgtattaagaggaacaaataaagctgatgctggaaaagaactagaa
acacagaaagaagtggtagtgtcaatgttactgagactcatccaataccatcaggtgctg
gagatgttcatcctagtactgcagcagtgtcacaaagagaatgaagacaaatggaaaagg
ctgtcccggcaaatagcagacattattctcccaatgcttgcaaagcaacagatgcacata
gattcccacgaagctttgggagtattgaacactttatttgaaattttggctccttcatct
ctccgtcccgtggacatgctgttaaggagtatgtttgttactcccaaaacaatggcatca
gtgagcactgttcagctatggatatctggaatccttgctatcctcagagttctcatttct
cagtcaacagaggatatagttctgtctcgtattcaagagctttccttctccccatactta
atctcatgtcaagcaattgacagactacggcacggagagaatgtgtccactcctgaagac
caatttgaggtgaaacaggctaagtatatgcctgaagagacattttccaggttcttatta
cagctagtgggcattcttctggaagacattgtgcataaacagttgaaagtggatatgaat
gagcagcagcatactttctattgccaagagctgggcacactgcttatgtgccttatacat
atcttcaaatcaggaacattcagaagaatcacagcagcagccaccaggctttttacagga
gatggatctgatggtagtttttatactcttgaaagcctgagtggtcttgttcaggccatg
attcccacgcatccatccttggtactgctctggtgtcaaatccttcttctcgtcaattac
accaactacagctggtggtctgaggtgcatcagactccaaagagacatagtctttccagt
actaaactgctcagtcctcagatatctggagacagtgatgagtctgattcagaatccaaa
ctttgcatgtgcaatcgcgagatcgtacgaagaggagcacttattcttttttgtgactat
gtttgtcaaaatctacatgattcagaacatttgacctggcttattgtgaatcatgttcaa
gatctgattaatctatctcatgagcctccagtacaagactttattagtgctgttcacagg
aattcggctgccagtggtctttttatccaggctattcagtctcggtgtgagaacctctca
actccaacaactctaaagaagaccctgcaatgtctggaggggattcatctcagccaatct
ggtgctgtcttaatgttgtatgtggataagcttttatgtactccatttcgtgtgctggct
cgcatggttgacacacttgcttgtcgtcgagtagaaatgctgttggctgcaaccttacag
aacagtgttgctcaattaccagttgaagaattggatagaattcaagaataccttcaaaac
agtggattgggagcaagacaccagagactttactcgctgttggataggtttcgtcttaca
gtagcaccagacacaaatagtccctcgcccttggttactcttcacccactggatggggaa
aaccgaccagccctagagaatctaactccggacaaagactggtatgtgtcgctggtcagg
tcacaatgctgtgtcaggtcagactctgcactgctggaaggtgcggaactggtgaataga
attcctcaacctgaactgaactccttcatgaccactaaggaattcaacttaagcttgttg
tctccctgtttaagccttggcatgaatgaaatgtcaggagaccagaagaccagtctcttt
gaaactgctcgtcgggtaactctagatcatgtgtctaccattgtacaaaaacttccagcc
aaccatcaagtttttcaaccattgcagccaattgagacttcagcctactggaacaaacta
agtgatatctttggcgatgtgttggtgtatcagtctgtgatgacactctgtcgtgcactg
gctcagtatttgctgttactctctaaactaccagcatgtcttcgtattccacctgacaca
ggaagtgatatattgaagtttgttgtaatgtcactagaggcactgtcatggcatttaata
catgaacaggtccctctaagtacagatattcaagctgttttggattgttgttgcctgact
ttgcagcagcctgctctctggaactcactggcttctgcagtgtatgtgacacatgcctgc
tctcttattaattgtgtgcgatttctaatagaagcagttgcagttaaacctggagatcag
ctgcttagtccagaaaggaaaaaaaatacttcaaaaatagttggtgaagatgaagttgat
tccaatgaccagaaaatgaagcatgttacaaaggcttgtgaaatggtggctgaactggta
gagtgtttgcagactgttctagcattgggacacatgagaaacagcaatatcccagcattc
ctcactcctgtccttaagaacattatcatcagcttggccagactacctctagtgaacagc
tacacaagagtacctcctttggtctggaaactaggctggtcaccaaaacctttgggtgac
tttggtacagttttcccagaaattcctgttgaattccttcaagaaaaagaaatatttaaa
gaattcatctatcgcattaacacactagggtggactagccgtacccagtttgaagaaaca
tgggctactcttcttggtgtgctggtaacacagccaattgtaatggaccaggaagaaagc
caacaagaggaggacacggagaggacccaaatcaatgttcttgcagtacaagccataacc
tcgttggtgctgagtgcaatgacaatacctgtggcaggcaatccagcagttagttgcttg
gagcagcagccccgcaacaaagctttaaaagctctggatacaaggtttgggaggaagtta
agtgttgttagagggattgtggaacaagaaatccaagcaatggtatccaagagagataat
attgcaacacaccatttataccaagcctgggaccctgttccgtcactttctcccgctacc
acagcggctcttatcagccatgaaaagcttttgctgcagatcaatactgagcgagaatta
ggaaacatggattataaactgggacaggtttctatacactctgtgtggctgggaaataat
atcactcccctgagagaagaggagtgggatgaagatgaagatgaggagaatgacttgcct
gctccttcctcaccaccaacctctcctatcaactccaggaaacatcgggctggtgttgac
atccattcatgctctcagttcttgcttgagctgtacagtcagtggatattgccatcaaat
cctagcaagagaacacctgtcatcttgattagtgaagtggtgcgatcgcttctggcagtt
tcagacttgtttacagaaagaaatcagtttgagatgatgtacacaaccctgacagaattg
aggaaggtgcatccatcagaagatgagatcctcattcagtatttggtacctgccacatgt
aaggcagcagctgttcttggaatggataaagctgtagctgagccagtgagtcgtcttttg
gaatcaaccctgcgtagcacacacatgccaagtcggattggcgctctccatggaattctt
tacattctcgagtgtgacctgcttgatgagacagcaaagcaactcattccaattatcagc
gagtatctgctctccaatctgagaggggtagcacattgtgtgagtgtccataaccaacag
cacatcttggtaatgtgtgctgcagcattctacttgatagagaattatccacttgatgta
gggcctgagttctcttcaggaataatacagatgtgcgtcattatggtgtctggaaacgat
gaatctactccatccatcatataccattgtgtcctgagaggactagaacgactcctgctt
tcagagcaactctctagactggatagtgaatctctagttaaactaagtgttgacagagtg
aatgtacacagcccccaccgagcaatggcagcactggggttaatgctgacctgcatgtat
acaggaaaggagaaaattagtccaagtcgtgctacagatgcaaatcccacagccccagac
agtgaatccgttattgtggctatggaacgggtatctgttctttttgataggatcaggaaa
ggatttccttttgaagctagagtagttgcacgaatcctccctcaattcctagatgacttc
tttcctccacaggatgtaatgaataaagttattggagaatttttatccaaccagcagcca
taccctcagttcatggcaactgtagtatataaggtatttcagacactacataccactgga
cagtcatcgatggtccgtgactgggtgatgctttctctctccaacttcacccagagaaca
cctgttgctatggcaatgtggagtctttcctgtttctttgtcagtgcttccaccagtcag
tggatttcagcaattcttccacatattatcagcagaatgggaaaatcagaacaagtggat
gttaaccttttctgtttggtggccatcgatttctacagacatcaaatagatgaagagcta
gaccggagagcctttcagtctgtgtttgaggttgtggcatcgccaggaagcccctatcat
tgtctgctaacttgtttgcaaaatgttcacaagatcacagcatgctaa
DBGET
integrated database retrieval system
