Alligator mississippiensis (American alligator): 102572292
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Entry
102572292 CDS
T03087
Symbol
TMC1
Name
(RefSeq) transmembrane channel like 1
KO
K21988
transmembrane channel-like protein
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amj02000
]
102572292 (TMC1)
03037 Cilium and associated proteins [BR:
amj03037
]
102572292 (TMC1)
Transporters [BR:
amj02000
]
Other transporters
Pores ion channels [TC:
1
]
102572292 (TMC1)
Cilium and associated proteins [BR:
amj03037
]
Other cilia and associated proteins
Stereociliary proteins
102572292 (TMC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
COX16
TCAD2
Motif
Other DBs
NCBI-GeneID:
102572292
NCBI-ProteinID:
XP_014464105
LinkDB
All DBs
Position
Un
AA seq
796 aa
AA seq
DB search
MTVHRFKCFKVEVEEGSAAESEENDKTGENKTYGDDEGDQKPDPVHRVPRKRPQRIRVGL
ESDSDEEVSKSRKNRANQKSKEEGGEDGEDEEKGGKKGRGKNDKKNDKKGKKEKANKKKK
DKKKSGSGSDSDSEEEPITEEELAKLKEEVEEKKKLIATLRNKPWKMKKKLAVLKEAQLF
VEKFEGALGKGKGKKFYAYKVMMMKKWLKFQRDFENFKTACIPWEFKIKEIESHFGSSVA
SYFIFLRWMYGVNMILFGLSFGLVMIPEALMGKPYGTLPRKTVPRAEEANAMNFATLWDF
SGFAQYSVLFYGYYDNKRTIGWLKFRMPLSYFLVGVGTIGYSFMVVIRTMAKNAHDDGGG
DDTSFNFSWKMFTSWDYLIGNPETADNKFASITTSFKEAIVEEQESRKEENIHLTRFLRV
LANFFAFCTLAGSGYLIYFVVRRSQQFALEGMDNLGWWERNEVNMVMSLLGMFCPTLFDV
ISSLENYHPRIALRWQLGRIFALFLGNLYTFIIALMDDINLKLEEEKIVRYNMTIWEASL
YNGTIPENATAPPIQVDPADVPRGPCWETMVGQEFVRLTVSDTVTTYITILIGDFLRAVF
VRFFNYCWCWDLEYGFPSYSEFDISGNVLGLIFNQGMIWMGSFYAPCLPAINIFRLHTSM
YLQCWAVMCCNVPQERVFKASRSNNFYMAMLLFILFLSTLPVVYTVVSIPPSFDCGPFSG
KTRMYEVIGETLEHDFPSWFAKVFGYASNPGLILPFILLMVLGIYYLNATSKSYKEANLE
LKKKLQMQAEENKKRN
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcacagatttaaatgtttcaaagtggaagttgaagaaggcagtgcagctgaa
agtgaagaaaatgacaaaacaggagagaataaaacatatggtgatgatgagggagaccaa
aaaccagatcctgtgcaccgtgtaccacgcaagagaccacagagaatacgtgtggggctt
gagagtgattctgatgaagaagtcagcaaaagcaggaaaaacagagcaaatcagaaatcc
aaagaggagggtggtgaagatggtgaagatgaagagaaaggaggcaaaaaagggagaggc
aaaaatgacaagaaaaatgataagaaagggaaaaaagagaaggccaacaagaaaaagaag
gataaaaagaagtcaggttcaggctctgactctgactctgaagaagagccaattacagag
gaagaactggccaaactgaaggaagaagtagaagagaaaaagaaactaattgctacatta
cgaaacaagccatggaagatgaaaaagaaattagctgtcttgaaggaagcccaacttttt
gttgaaaaatttgagggtgctcttggaaaaggaaaaggaaaaaaattttatgcatacaaa
gtaatgatgatgaagaaatggctgaaatttcaacgagattttgagaattttaaaactgcc
tgcataccgtgggaatttaaaatcaaggagattgaaagtcattttggctcttcagtggcg
tcgtatttcatattcttgcgttggatgtatggagtaaatatgattctctttggcctgtcc
tttggacttgtaatgatacctgaggcattgatgggaaaaccatatggcactttacctaga
aaaactgtcccaagagctgaagaggcaaatgctatgaactttgctacgttgtgggacttc
agtggctttgcacagtattctgtgctcttttatggctattatgacaacaaaagaacaatt
ggatggctgaagttcaggatgccgctttcatactttcttgtgggagttggaaccattggc
tatagcttcatggttgtcattcgaacaatggcaaagaatgcacatgatgatggtggtggg
gatgatacaagttttaatttcagctggaaaatgttcaccagctgggattatctgatcggc
aatcctgaaacggcagataataaatttgcctcaattacaacaagctttaaggaagccatt
gtggaggagcaagagagccgaaaagaagaaaatattcacttaactcgattcctgagggtt
ctcgctaacttctttgccttctgcacacttgctggcagcggttacctcatctattttgtt
gtgagaagatcccagcagtttgccctggaaggcatggataaccttgggtggtgggagaga
aatgaagtgaacatggtcatgtccctcttgggcatgttctgtccaactttatttgatgtc
atcagttctctggaaaactaccacccacgaatagctctcagatggcagctgggacgcatc
tttgctctcttcttaggcaatctgtatacgttcattattgccctcatggatgatattaac
ctcaagctcgaagaagagaaaatagtgagatataatatgacaatatgggaagccagcctc
tacaatggtacaatcccagagaatgccacagctcctccgatacaggtggatcctgcagat
gttcctcgaggaccatgttgggaaacaatggtagggcaggaatttgtgcgactgacagtc
tctgacacggtgacgacgtacatcacgattttaattggcgatttcctgagagctgtcttt
gtcaggttcttcaattactgctggtgctgggacttagaatatggatttccttcttattca
gagtttgatataagtggaaatgtgctgggactgatcttcaaccaaggcatgatctggatg
ggttctttttatgctccgtgccttccagctatcaacatatttcgtctccacacctccatg
tacctgcagtgctgggctgtgatgtgctgtaatgttcctcaggagagggtcttcaaagcc
tccagatccaataacttctacatggccatgctgctgtttattctcttcctctccacgctg
cctgttgtgtacactgttgtttctatcccaccatcttttgactgtggcccattcagtggg
aaaaccagaatgtacgaggtcattggagaaaccttggagcatgacttcccttcctggttt
gcaaaagtgtttggttatgcctctaaccctggattgattcttcccttcatattgctcatg
gtcttgggtatctattatctcaatgctacatccaaaagctacaaggaggctaacttggag
ctcaaaaagaagctacagatgcaagctgaagaaaacaaaaagagaaat
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