Alligator mississippiensis (American alligator): 102572764
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Entry
102572764 CDS
T03087
Symbol
COL13A1
Name
(RefSeq) collagen type XIII alpha 1 chain
KO
K16617
collagen type XIII alpha
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102572764 (COL13A1)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102572764 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102572764
NCBI-ProteinID:
XP_014464835
LinkDB
All DBs
Position
Un
AA seq
728 aa
AA seq
DB search
MLEEKGWKGASQSAFDRGCVALHRTGDGERCCRLPLLLGFGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRSSQLPAWLSADQMETAILGRVDQLLEEKLKFSLPRHREVRETHQRC
NCPAGPPGPTGRPGLPGDKGTMGIPGRRGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGAAGPKGQLGPPGQKGEKGQCAEYPHREYLSTTLAA
LRSNQILTLKGEQGQAGIQGPPGPPGPPGPTGPAGPAGHSGQPGPSGPPGRAGEPGKPGK
DGKGIPGPPGPKGDPGIQGYSGRKGEPGTPGEKGEKGKAGDPGLPGLLGLKGEKGDAGNV
LGGGKGEPGLPGLPGAPGLKGEAGDIGQPGLQGEKGEPGAPGDHGPVGPRGPKGEPGKDE
MVDYDGNINDALQEIRTLALMGPPGLPGAAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKP
GEMGPLGPQGPSGKDGPPGVKGEPGLMGTSGLKGDKGEAGQAGSPGLDGPTGEKGEQGDQ
GIPGSSGLPGPIGLPGLTGEKGEPGERGEKGKPGESVSGPPGPQGPPGASGPQGLPGPKG
EAGIDGMKGEKGVQGEKGDRGPLGLPGASGLDGRPGPLGTPGPIGVPGPAGPKGERGSKG
DSGIAGPMGPAGLPGLPGPPGDKGNRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGL
PVQGCWNK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggaaaagggctggaaaggtgctagccagagtgcctttgacaggggatgtgtt
gctctccacaggacaggggatggggaaagatgctgtagacttcctctactgctgggcttt
gggcttcctggggtgtctttgctttctctggtgctgagcctcctgctatactttaggaca
tcagacctgcaatccagggtttctcatttggaagcagacagatcctctcagctccctgcc
tggctctctgcagaccaaatggagacagctattttgggaagagttgaccaactgcttgag
gagaagttaaagttcagcttgccaagacatcgagaagttcgagaaacccaccagagatgt
aactgcccagcaggtccacctggccctacaggaagaccagggcttccgggagacaaaggc
accatgggaatccctggacgacggggactaaaagggcagcctggagaaaagggagctcca
ggagaagcaggcatgtccatcattgggccccgagggcctcctggacagcctggaacgaga
ggttttcctggatttccgggccctattggtttggatggcaagccaggccatcctggacag
aaaggggagatgggtgcagctggtcctaaggggcagctgggacctccaggacaaaaagga
gagaagggtcaatgtgctgagtacccacacagggaatacctaagtactacacttgcagct
ctacgctctaatcagatccttacactgaagggtgaacaaggacaggcagggatccagggc
ccgccagggccacctggtccaccagggccaactggaccagctggaccagcaggacattca
ggacaacctgggccaagtgggccacctggcagagcaggggagcctgggaagcctggcaag
gatgggaagggcatacctggaccccctggaccaaagggagacccaggaattcaaggctac
tctggaaggaagggagagccagggactccaggagaaaagggagagaaaggaaaagctggt
gatcctggcctgcctgggctcctcggactaaagggagagaagggagatgctggtaatgtg
ctcgggggaggtaaaggagaacctggactcccaggattacctggggccccaggactaaag
ggagaagctggtgacattggccagcctggactgcagggagaaaagggagaacccggtgca
cctggagatcatggacctgttggtccaaggggtcccaaaggagaaccaggaaaggatgaa
atggtggattatgatggtaacatcaatgatgctctacaggaaatacgaactttggccctg
atgggacctcctggacttccaggagcagctggacccccggggccaccaggacaaaagggt
gaaattggcttgccagggcctcctgggcatgatggggaaaagggcccacgaggtaaacca
ggagaaatggggcctcttggtccccaagggccctcaggaaaggatggacctccaggagta
aagggagaacctggacttatggggacttcaggactgaaaggagacaaaggggaggcagga
caagctggctcaccgggtctcgatggcccaaccggggagaaaggagaacaaggtgaccaa
gggataccaggatcttctggattaccgggtccaattggacttccaggacttacaggagag
aagggagaacctggagaacgtggagaaaaaggaaaaccaggggagtcagtatctgggcca
cctgggccccaaggtccacctggtgcttcaggtcctcaaggccttccaggaccgaagggg
gaagcagggattgatggaatgaaaggagagaagggtgtccagggtgaaaaaggagaccga
ggtccactgggattacccggtgcctcaggtttagacggcaggcctggaccactgggtact
ccaggaccaattggagttccaggaccagcaggaccaaaaggggaaaggggaagtaaagga
gactctggaattgcaggaccaatgggaccagctgggcttcctggtttaccaggcccacct
ggtgacaaaggaaaccggggggagaggggcaagaaaggctctagagggtctaaaggggat
aagggagaccaaggagcgcctggattagatgcaccctgtccattgggggaagatggcttg
ccagttcagggatgttggaataagtga
DBGET
integrated database retrieval system
