Alligator mississippiensis (American alligator): 102572799
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Entry
102572799 CDS
T03087
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102572799 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amj03400
]
102572799 (LIG3)
Enzymes [BR:
amj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102572799 (LIG3)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102572799 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
102572799
NCBI-ProteinID:
XP_006270164
LinkDB
All DBs
Position
Un
AA seq
906 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKVVPNPFTESGGDMKEWYHVKCIFEKL
ERARATTKKIEDITDLEGWEELQDAEKDLINQLISEATSKSASTPKKKATVQAKLSPSGQ
ITSPKKDPGAVPNPSPKKFSGFTAKPGSSGDTPANSSHKSTLSSKKCDPKHKDCLLREFR
KLCAMVADKPSYNVKTQIIQDFLQKGTGGDGFHGDLYLTIKLLLPGVIKIIYNLNDKQIV
KLFSRIFNCSQDEMVRDLEQGDVSETVRIFFEESRSCPPAAKSLLTIQEVDEFLIGLSKL
TKEDDQQTLLQGITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNL
QDVVERVLRNQQEAEKQPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEI
KYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPRAFPGGHSMILDSEVLLIDNK
TGKPLPFGTLGVHKKAAFQDANVCLFVFDCVYFNDVSLMDRPLCERRKFLHDNMVEIPXP
DPLLRDEACHKSFRSGRYDQRVIREGLEGLVLKDIKSTYEPGKRHWLKVKKDYLNEGAMA
DTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKTEKWCTVTKCSGGHDDATLARLQNELDM
VKISKDPNKIPSWLKINKLYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRC
TRIRDDKDWKTATNLPQLKELYQLSKEKSDFSVVAGEEEVSTAGSSGENNGNSGSSTPHN
TPKTPPRKSPAKTKKSEGNNLVYMTPKKKVEDKRGEKRKAAELDDNGKKILLDIFTGVRL
YLPPSVENFSKIRRYFVAYDGDLVQEFDTASATHVIGDLEENPGAKRVSPSWIWECIRKR
RLVAPC
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagcggtactgcgtggactacgccaagcgcggcacggccggttgcaagaag
tgcaaggagaagatcctgaagggcatggtccgcattgggaaggttgtgcccaaccccttc
accgagtcgggcggcgacatgaaggagtggtaccacgtgaagtgcatattcgagaagctg
gagcgggctcgtgccaccaccaagaagatagaggacatcacagacctcgaggggtgggag
gagctgcaagatgccgagaaagacctcatcaaccagcttatctcggaggccacatccaag
tctgcaagcacacctaagaagaaggcaacagtccaggctaagctgtcccccagtgggcag
ataacctcccccaagaaagatccaggagctgttcctaatccatctccaaagaaattctct
ggtttcacagctaaaccaggcagttctggggacacccctgccaattcttcccacaagtct
actctgtcttcaaagaagtgtgacccaaagcacaaggattgcttgttgcgggaattcaga
aaattgtgcgccatggttgctgacaagcccagctataatgtgaaaacacagatcatccag
gactttctgcagaaagggactggaggagatggctttcatggtgacttgtacctgaccatt
aagctgctgttgccgggtgtcattaaaattatttacaacttgaatgacaagcagattgta
aagctgttcagcagaattttcaactgcagccaggatgaaatggtccgggacctggagcag
ggagatgtttcagaaacagtccgcatcttttttgaggagagcaggtcctgtcctccagct
gccaaaagtctcctcacaatccaagaagtggatgagttcctaatcggactgtcaaagctt
acaaaggaggatgaccagcaaactctgcttcagggtatcactcgcaggtgcacgggcaat
gacctgaaatgcatcatcaggcttataaagcacgatttgaaaatgaatgctggtgcaaag
catgtgttagatgctttggatccaaatgcctatgaggcattcaaagcatcacgcaatctt
caggatgttgtggagcgtgtgctaagaaaccagcaggaggcagagaagcagccgggtctg
aagcgaaccctcagtgtgcaggcctctctgatgacccctgttcagcctatgctggctgaa
gcctgcaagtcaatagaatatgccatgaagaagtgtccgaatgggatgtacgcagagatc
aagtatgatggggagcgagtgcaggtccacaagaatggagatcatttcagctacttcagc
cgaagcctcaagccagtccttcctcacaaagtggcccattttaaggacttcatccccaga
gcttttcctggtggacacagtatgatcttggattcagaagttcttctcattgacaacaaa
acaggcaaaccactcccttttgggacccttggagtccacaagaaagctgctttccaagat
gccaatgtctgcttgtttgtatttgattgtgtttacttcaatgatgtcagcctgatggac
aggcctttgtgtgagcgtcgtaagtttctccatgataacatggttgaaatccccnagccg
gatcctcttctccgagatgaagcatgtcacaagagcttcagatctggcagatatgatcag
agagtcatccgtgagggactggaaggactggtgctgaaggatataaagagcacctatgaa
ccaggaaaacgtcactggctgaaagtgaaaaaggactatctaaatgaaggtgccatggct
gatacagcagacctggtggttctgggagctttctacggacaaggcagtaaaggtggaatg
atgtcaattttcctaatgggctgctatgatcccaagactgaaaaatggtgtacggtgaca
aagtgctctggtgggcatgatgatgccaccttagctcgcctgcagaatgagctggacatg
gtgaagatcagcaaggatcccaataaaattccaagctggctaaaaataaataagctctac
tatccagatttcattgttccagacccaaagaaggccccagtgtgggagataacaggtgcg
gagttctctaaagcagaagcccacacggcagatgggatttccattcgtttccctcgttgt
acccggatccgagatgacaaagactggaagacagccaccaatctccctcaactcaaggag
ctgtaccagctctccaaagagaagtctgatttcagtgttgttgctggagaggaagaagta
tctacagctggtagcagtggagagaataatggaaattcagggtcttccacaccacacaat
actcctaaaactcccccaaggaagtcgcctgcaaaaaccaagaagtctgaaggtaacaat
ttagtctatatgacccccaaaaagaaagtggaggataaacgaggggagaagcggaaagca
gccgagctggatgacaatgggaagaagatattgctggacatatttacaggggtgaggctg
tacctaccaccctccgtggagaacttcagcaaaatccggcggtactttgtggcatatgat
ggggaccttgtacaagagtttgatacggcttctgcaacgcatgtgataggggaccttgag
gagaaccctggagctaagcgtgtgtcacccagttggatctgggagtgtatccgcaagcgg
agactggtagccccctgctaa
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