Alligator mississippiensis (American alligator): 102573227
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Entry
102573227 CDS
T03087
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03030
DNA replication
amj03410
Base excision repair
amj03420
Nucleotide excision repair
amj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102573227 (RFC1)
03410 Base excision repair
102573227 (RFC1)
03420 Nucleotide excision repair
102573227 (RFC1)
03430 Mismatch repair
102573227 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amj03032
]
102573227 (RFC1)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102573227 (RFC1)
DNA replication proteins [BR:
amj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102573227 (RFC1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102573227 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_5
AAA_14
AAA_22
AAA_30
BRCT_2
AAA_16
Rad17
AAA_33
nSTAND3
AAA_18
AAA_7
RuvB_N
AAA_17
AAA_19
RNA_helicase
TCAD2
NTPase_1
Motif
Other DBs
NCBI-GeneID:
102573227
NCBI-ProteinID:
XP_006258533
LinkDB
All DBs
Position
Un
AA seq
1143 aa
AA seq
DB search
MDIRKFFGVVSTGKKNECEAAKKTEKTKNGEGTSAGKKKRKEIKVKNSSNEDDTPKKQTK
KKKRIIYDSDSEEETQSVKKSKKLPERKQSSSKPDTVLKQDPVVYVSETDEEDDFVKKTC
LKLKENGASAHSCQGTAGVRKEDAKPQAKSKLLSPVKLTPTSALDYFGTGSVQQSEKILV
SSKRKEPSQSRDSTLEDEAIAKMLQLEEDAELERQLHEDEEFARTLAMLDETPKVKKVRN
DPEVKSTTLVTKMSPNTADKHKQSQKASSIHDGMNYDKKEQTKSESTRESCSRPEPSVDK
AMNKTLPLKPSSKLVALKQKEESKKKERESLSVAARERETSEKEEKATPKKERVSPKKPE
SVSPEDSEKKRVNYQAYRSFLNREGPKALGSKEIPQGGENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGSVSKKTNYLVMGRDCGQSKCDKASALGTKIIDEDGLFDLIQTMPGK
KSKYELAAEAEVNKAKSQGEKTPQKAGAAKKKNSSAKKETDSKKKKSTPGKGGSLKAFKK
ENAEVRKVLDFMQQAAETKHTSNAEETFVSEISTGGTEGLLWVDKYKPTSVKTIIGQQGE
QSCANKLLRWLRNWHENTSENKHAKPSKFGGRDDGTNFKAALLSGPPGVGKTTTAALVCE
ALGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSPSVSTKHVLIMDEVDGMAG
NEDRGGIQELIGLIKFTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSV
AYKEGLKIPPPAMNEIIMAANQDIRQVLHNLSMWCAKDKSLTYDKAKADASKAKKDIKLG
PFDVVRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPVAAGNNLKKHLML
LSRAADSICDGDLVDTQIRRKQNWSLLPTQAIYASVLPGELMRGYMSQFPNFPSWLGKFS
STGKHERIIQELAMHMSLRTNTCKRTVNVEYLSYLRDAIVRPLTSLGVEGVPDAVTFMDS
YCLMKDDVENIMEISSWGGKPSPFSKLDPKVKAAFTRTYNKEAHLTPYALHVVKTSKRRA
GSTLTSELNEELNADELQSEEEQDTIENDAMIKQKKTKSSKVSKAEKSEEPKMEGKRKVK
MRR
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggacatccgaaaattctttggggttgtatctactgggaagaaaaatgaatgtgaggca
gcaaaaaagactgagaaaaccaaaaacggggaaggaacttcagctggaaagaaaaagaga
aaggaaatcaaagtgaaaaattcatctaatgaagatgatacccccaaaaaacagacaaag
aagaaaaaaaggatcatctatgattcagattcagaagaggagactcagtcagtgaaaaag
tccaagaagctgcctgagagaaaacaatcatcttcaaaacctgatacagttctaaagcag
gatcctgttgtttatgtttcagagacagatgaagaagatgactttgttaagaaaacttgc
ttgaaactgaaggaaaatggggcgtcagcacacagctgccaaggaacagcaggagtgaga
aaggaagatgcaaaaccacaagctaaaagtaaactgttatctccagtaaagctgacacca
acttcagcacttgattattttggaactggtagtgtccaacaatcagagaagatactcgta
tcaagcaaaagaaaagagccttctcaaagcagagattccacactggaagatgaggccatt
gctaagatgttgcagcttgaggaggatgcagagctggagagacagctgcatgaagatgaa
gaatttgctaggactttggctatgctggatgaaacaccaaaggtgaaaaaggtgcgtaac
gatccagaagtaaagtcaacaactttggttaccaagatgagtccaaacacagcagacaaa
cataagcagtctcaaaaagcaagctcaatacatgatggaatgaattacgataagaaggaa
caaactaaatctgaaagtacaagagaatcttgttcacgtccagaaccatcagttgataaa
gctatgaataagaccttgcctttgaaacctagttccaagctggtggctctgaagcaaaaa
gaagaaagcaaaaaaaaggagagagagagtctgagtgtagcagcaagagagagagaaact
tcagaaaaggaagaaaaagcaacaccaaagaaagagagagtttctcccaaaaagcctgag
tctgtaagtcctgaagactctgaaaagaaacgagttaactaccaggcctatcgaagcttc
ctcaatcgagagggtccaaaagcgttggggtccaaagagataccacaaggaggtgaaaac
tgcttagaaggccttacatttgtaattaccggagtcctggagtctattgaacgagatgag
gccaagtctttgattgaacggtatggaggaaaagtaactggcagtgtcagcaagaagacc
aattatcttgttatgggtcgtgactgtggtcagtctaaatgtgataaggcatctgcttta
gggacaaagattattgatgaagatggcctatttgatctgattcaaactatgcctggcaaa
aagtccaaatacgaattagcagctgaagcagaggtaaacaaagcaaagtcacaaggggag
aagaccccacagaaagctggtgctgccaagaaaaaaaatagctcagctaagaaagaaact
gattctaaaaaaaagaaatcaacgcctggaaaggggggcagtctcaaagcattcaagaaa
gaaaatgctgaagtgcggaaagttctggactttatgcagcaagcagcggagacaaaacat
acctcaaatgctgaggagacttttgtttctgagataagcacaggtggaacagagggcttg
ctgtgggtggataaatataagcccacgtcagttaaaacaataatcggacagcaaggagaa
cagagctgtgctaacaaactgctacgatggctccggaactggcatgagaatacatccgag
aacaaacatgcaaaacccagtaaatttggaggcagagatgatggtactaattttaaggca
gcattgctctcgggtccaccaggtgttggcaaaactactacagctgctttagtttgtgag
gcattgggctacagctatgtggagctgaatgccagtgacactcgtagcaagaacagtttg
aaagaagtggtggctgaatctctaaacaataccagcatcaaagacttctgttccggaact
tccccttcagttagcacaaagcatgtactgatcatggatgaggtggatggaatggcaggc
aatgaagaccgaggaggaatacaggagttaattggattgatcaagtttacaaagatacct
atcatctgcatgtgtaatgatcggaaccatcccaaaattcgttctctggtccattattgt
tttgatcttcgttttcagagacctcgggtagaacagattaagggtgccatgatgtctgtt
gcatataaagaaggtttaaagatcccaccacctgcgatgaatgagataatcatggcagca
aatcaggatatcaggcaggttttgcacaatcttagtatgtggtgtgcaaaagataaatca
ttgacatatgataaggccaaagctgatgccagcaaagccaaaaaggacatcaaactgggg
ccctttgatgtcgtccggaaagtgtttgcggctggtgaggagactgctcatatgtctctt
atagacaaatcggaccttttcttccatgactactctctagcacctctttttgttcaggaa
aattatgtacatgtgaagcctgtcgctgctggaaataacttgaaaaagcatttgatgctg
ctgagcagagcagcagatagcatctgtgatggtgatctcgttgacactcagattcgcagg
aagcagaactggagccttcttcctacgcaggctatttatgccagtgttcttccgggagag
ctgatgagaggttacatgtcccagtttcctaacttcccaagctggctggggaaattttcg
tctacaggcaaacatgagcgtatcattcaagaactggcaatgcacatgagtctcagaacc
aacacgtgcaagagaacagtgaacgtagagtatttgtcatatttgcgggacgcaattgtc
agacccttgacaagtttaggagtagaaggtgtgccagatgctgtaacatttatggactcc
tactgcttgatgaaagatgatgttgaaaatatcatggaaataagtagctggggaggcaaa
cctagtcccttctctaaactggatcccaaggttaaagcagcttttacacgcacctataac
aaagaggcccatctgactccatatgcactgcatgtagtgaagacatctaaacggcgagca
ggatccactctgacttcagaactgaatgaagaattgaatgctgatgaactccagtctgag
gaagagcaagatactattgaaaatgatgcaatgatcaagcaaaaaaagacaaagtcttcc
aaggtgtcaaaagcagaaaaaagtgaagaaccaaaaatggaagggaaaagaaaagtaaaa
atgaggcgatga
DBGET
integrated database retrieval system
