Alligator mississippiensis (American alligator): 102573529
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Entry
102573529 CDS
T03087
Symbol
SCAF8
Name
(RefSeq) SR-related CTD associated factor 8
KO
K13191
RNA-binding protein 16
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102573529 (SCAF8)
03041 Spliceosome [BR:
amj03041
]
102573529 (SCAF8)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102573529 (SCAF8)
Spliceosome [BR:
amj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102573529 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102573529
NCBI-ProteinID:
XP_014452234
LinkDB
All DBs
Position
Un
AA seq
1400 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPTTTAAMSNNTPGTPVTPVTPANVVQSLPDPWM
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEHSEEPKKETPTSQMPLVSESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANLDDSIDIQQQDMDIDEGQDVVEEEIFEQEEKKSAVRSRSRTHSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSRTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKVDDLDGFAEGGMIDQETVNTEW
ETVRNSEAAKETVQTTQSATVEKNTVVTTQTEVYTQPVTMLQDFAAWRRGRMTASFPVPA
NRRECSPSPFTAALRLAPVFGKFYPITRIPVAPAVPAVNLVPPAFPVSMSVPPPGYSSIP
PPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPPVVPTSLVQPPLPITQDTIKDV
PFSTLVLPVGTVSSNLATPTLSAGSGFNPLTSSKPEAEEKASHHTDLQVSSNENVRSVQN
DASSSSGLAGGVPPPSVSSSSGLVGGLPPPSVSSSSGLVGGLPPPSISSSSGLAGGVPPP
SISSSSGLAGGLPPHSVSSSSGLAGGGPPPNVSSSSGLLPGAQPPIVSSSSGVMPGVQPP
IVSSSSGLLPPNISSSSGLLAGVQPPSVSSSSGLMAVPPPNVSSSSGLMGLPPPNISNSS
GLLAMQHPVGIHNMPHLNIGSPRMPGMPLLDIRPGLIPQSPGPRFPLMQPGMPPQRNIPP
PPTILDPSLHPPPRGPFPPGDLFNQTERPFGTPGRQNIDPISNAEKRLPLGGENIQQEGD
RDYRFPPVENRENLNRPSPVDVRDAAGRPPVDPREGLGRPPLEAREHFARPHADMRENYG
RPGLDGLGRREHFGFNTDKHWGQRGDYDEREHHAFPIFGGPKGFHEDRERFRHVNYRFDA
RSGPGWNRGYEQDAHRDFDDRRRPWERQRDRDDRDFNFCREVNGNRFGRDRMQNNWIPPP
HTRVFEYFEGATSQRKAENMTQVNGENTETESQPPTVQLQNDPELYEKLASSGEMNKEKS
DTEADIESEPVVESTETEGT
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagccttcaacagcgagttatactcgctaaatgattacaaaccaccc
atttccaaggctaaaatgacacagatcaccaaggcagcaatcaaagctataaagttctac
aaacatgttgtacagagtgttgaaaaattcattcaaaagtgcaaaccagaatacaaggtg
cctggcctatatgtcattgactctattgtgcgacagtctcggcatcagtttgggcaagaa
aaagatgtgtttgccccaaggttcagcaataacatcatcagcactttccagaacttatac
cgttgtcctggagatgacaagagtaaaattgttagagtgctgaatttatggcagaagaat
aatgtattcaagagtgaaattattcagccgctcttggatatggcagcaggaattcctcct
ccagttgtgaccccagtcttgcctactaccacagctgctatgagcaacaatactccagga
actcctgtgacccctgttactccagctaatgtggtacaaagtttacctgatccttggatg
tctcagattgctaatacagatacacttgctgcagtagcacagattttacagagtccacag
ggccaacagcttcagcagttaatacagacgctacaaatacagcagcagaaaccacaacct
tcactgctccaagcactggatgctggtcttgttgttcagttacaggccctcactgcacaa
cttacagctgcagctgctgctgccaacacacttaatccactggaacagagtgtctctttt
aacaagaagctgatggacaggtttgattttggggaagagtctgaacacagtgaagaacct
aaaaaagaaacacctacttcccaaatgcctctagtatctgaatctgtgaacaactcactt
tttcatcagctagctgaacagctccaacaacaaaatttagaacatctccggcagcaactc
ctggagcaacaacagcctcagaaggcaagcccagaggaaaatcaggaaggaaattttggt
tcagagcattccgcatcaccatcacaaggaagtagccaacagcagtttttagaagtagaa
gcaaacctggatgactcgatagatattcagcaacaggatatggatatagatgaaggacaa
gatgtagtagaagaggagatctttgaacaggaagaaaagaaatcggctgttcgttcaaga
tcaagaacacactcaagatctcgttcaaggtcaccaagaaagcgaaggtcaaggtcacgg
tctggttctcgaaaacgtaaacacagaaaacgttcacgctcaagatcaagagagaggaaa
aggaagtcatctcggtcatactccagtgaaagaagagctagggaaagggaaaaagagagg
cagaagaaaggattgcctcctataaggtccagaacactaagtgtctgcagtactactctt
tgggttggtcaagtcgacaagaaagctacacagcaagatttaactaatttgttcgaagaa
tttggacaaatagagtctattaatatgattccccccagaggttgtgcatacgtctgcatg
gttcatagacaagatgcatatcgtgctcttcagaaactaagctctggatcctacaaaatt
ggatctaaaattattaagattgcctgggctttgaataaaggggtgaaaacagagtacaaa
cagttctgggatgtggatcttggagtttcatatataccttgggaaaaggtaaaagtggat
gatttggatggctttgctgaaggaggcatgatcgaccaggagactgtaaacactgaatgg
gaaactgtgagaaactcagaggctgctaaagagactgttcaaactactcagagtgcaact
gtcgagaagaacacagttgtcacaacacaaacagaagtttatactcaaccagtcactatg
ctacaggacttcgctgcatggaggcgtggaaggatgactgccagcttcccagtccctgcc
aataggagggagtgtagtccaagtcctttcacagctgcactcagattggcaccagttttt
ggcaagttttatcctataacaaggatcccagtagctccagctgtgcctgctgttaatcta
gttccaccagcatttcctgtctcaatgtctgtccctcctcctggctatagttcaattcct
ccaccaccattcttgcgggcaagtttcaatccttcacaaccacctcctggttttatgcca
cctccagtcccacctgttgtgccgccacctgttgttccgccacctgttgttccaccagta
gtcccaacatctttagtgcagcctccgttaccaattactcaagatacaataaaagatgtt
ccttttagtacccttgttttaccagttggcacagtttctagcaatctggccactccaacg
ttatcagctggaagtggttttaatcctcttacaagcagtaaaccagaggcagaagaaaaa
gcatctcatcatactgaccttcaggtttcctcaaatgaaaatgttagatctgtccaaaat
gatgcctctagcagctctgggcttgcagggggagtgccaccacccagtgtttccagcagc
tctgggcttgtcggaggactgccgccacccagtgtttccagcagctctgggcttgttgga
ggattgccaccacccagcatctccagcagctctggacttgcaggtggagtgccaccacct
agcatctccagcagctctggccttgctggaggactgccaccacacagcgtctccagcagc
tctggccttgcaggaggaggaccgccaccaaatgtctctagtagttctggacttttgcca
ggagcacaaccacctattgtctcaagcagctctggagttatgcctggagtacagcccccc
attgtctcaagcagctctggactactgccacccaacatctcaagtagctcaggacttctg
gcaggagtgcagccacccagtgtttcaagcagctcggggcttatggcagtaccaccaccc
aatgtctcgagtagttctggacttatgggattgccaccaccaaatatttcaaatagttct
ggacttctggcgatgcagcatcccgtaggaattcataacatgcctcatttaaatattggt
agtccaaggatgcctggaatgcccctcttagatatccgtccaggacttataccccagtca
ccaggaccaagatttccattaatgcaacctggaatgccaccacagcgcaatatccctcct
cctccaacaatccttgacccatcccttcatccaccacctagaggtccttttcctccaggg
gatctttttaatcaaactgagagaccttttggaacacctggaagacaaaatattgatccc
atttctaatgcagagaaaagactaccacttggaggtgagaacattcaacaggaaggagac
cgagattatcgttttcctccagtggaaaaccgagagaatcttaataggccatccccagtg
gatgtcagggatgctgctggacgaccaccagtggatccaagagagggtctaggaagacct
ccactagaggctagagaacattttgcaagaccacatgcagatatgagagagaattatgga
agaccaggtctagatggtcttggtcgaagagagcattttggtttcaatacagacaaacac
tggggacagagaggagattatgatgaaagagaacatcatgcctttcctatctttggtggc
cctaaaggctttcatgaggacagggagaggtttcggcatgtaaattacaggtttgatgct
aggagtggtcccggctggaacagaggatatgaacaagatgctcacagagattttgatgac
cgtagaagaccctgggaaagacagagggatagggatgacagagattttaatttctgcaga
gaagttaatggaaacagatttggaagagacagaatgcagaacaactggatcccccctccg
catacaagggtttttgaatattttgaaggggccacttctcaacgcaaagctgagaatatg
acccaggtaaatggtgaaaatacagagacagaaagtcagccacctactgtgcaacttcag
aatgatccagaactttatgaaaaactggcatcttcaggcgagatgaacaaagagaagagt
gacacagaagctgatatagaaagtgaaccagtggtagaaagcacagaaactgaggggaca
taa
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