Alligator mississippiensis (American alligator): 102573939
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Entry
102573939 CDS
T03087
Symbol
SMARCAL1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102573939 (SMARCAL1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102573939 (SMARCAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
102573939
NCBI-ProteinID:
XP_006258944
LinkDB
All DBs
Position
Un
AA seq
944 aa
AA seq
DB search
MSSGLTEEQKRRIEENRQKALARRAERRAAPGEVGRPASQRLDPASLQQDGRRVGSCHQP
PGGQSQQKDGVEKGPSPVDTHAHPPAAGLCGAQPNNYPQGSNRAGGTRPFPPADAWSHPL
PPPRSGAQHQQAPQQPKYYLASKNPAEASCPRFADMHCRTEYTPLPSDSMLTDASRPPCG
PCPETCGGSSVSHFYSTVQPFAPLKEAKVQKRDSCGGGSSAVHSKARCALKGRCVRHGGD
RFQVEVGYSAELIAVFKTVPSRSYDPATKMWNFSLEDYCHLMKEVKELSSVTLAPLEGMD
AASQVPSSNSVTTSPTLKTLLKTCSGWQKPSAIVKGKCVLISRSRFEVDIGYDAEMIGVF
KQMGSRNYDMKTRKWSFLLEDYPRLMGAIQSLPSIEAEPLPKPVIQTFAAQLGATTTCAA
DIPDADLSAVDSKIVAGLMPFQREGVNFAISREGRLLLADDMGLGKTIQAICIAAYYQKE
WPLLVVTPSSVRFTWAEAFHRWLPSLSPGSTNVIVTGKDSLTSGLINIVSFDLLSKMDKQ
LKETFQVIIVDESHFLKNIKTARCRAAMPLLKAAKRVILLSGTPALSRPAELYTQIAAVR
PSFFPQFHSFGLRYCDAKKMPWGWDYSRSSNLGELKLLLEESIMIRRLKSEVLSQLPAKQ
RTVVVVAPEGINAKTKAVLAAATKEMAKGYKTKQEEKEALLLFYNRTAEAKIRSVIEYIL
DLLESGREKFLVFAHHKIVLDAISEELEKKRVGYIRIDGSTPSAERQALCQNFQVSEKLC
VAVLSITAANMGVTLSSADLVVFAELFWNPGVLIQAEDRAHRIGQTSSVSIHYLVAKGTA
DVFLWPMIQEKIKVLGAAGLSETNFSETAEATDYFIKDPRQKTIYDLFQKTFADDGDDLD
EALCMEAVDACQNPDLGCAGQSAEDSCSESPRKKQRIEDFFCKQ
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccggcctcacggaagagcagaaacgacggatcgaggagaacaggcagaaggcg
ctggcccggagagcggagcggcgagcggcaccgggggaggtcggccgtccagcctcccag
cgcctggatccagcaagcctgcagcaagatggccggcgtgtcgggtcgtgtcaccagccc
cccggcggccagagccagcagaaggacggcgttgagaaagggccgagtcccgtcgacaca
catgcgcatccgccggcggctggtttgtgcggagcgcaaccgaataattacccgcagggc
tcgaaccgagcaggcggcacaaggccgttcccgccagcggatgcctggagccatcccctg
ccgccgccgcgctcgggagcgcagcatcagcaagcgccgcagcagccgaagtactatttg
gcgagcaaaaaccccgcagaagcctcgtgccctcgattcgcggatatgcactgtcggacc
gaatacacgccgctgccaagcgactcgatgctgacagatgccagcagacccccgtgcgga
ccctgccccgagacgtgtggtggcagcagcgtgtctcatttctacagcacggtgcagccc
tttgccccgttgaaagaggctaaggtgcagaaaagggacagctgcggtggtgggagctct
gccgttcacagcaaagcacgctgtgctctcaaagggaggtgcgtgagacacggcggagac
cgcttccaggttgaagtgggttacagcgcggagctcattgccgtgtttaagaccgtacct
agcagaagttacgatccggcgacgaagatgtggaattttagcctggaagactactgccat
ctcatgaaagaagtaaaggaactttcctcggtgactttggcaccgttggaagggatggat
gcagccagccaggtcccatcttctaattctgtcaccaccagccctacactaaaaaccctc
ttgaagacatgcagtggctggcagaaaccctctgccatcgtcaagggcaagtgcgtgctg
atttcgcggtcccggtttgaggttgacattggatatgacgcagaaatgattggggtgttt
aaacagatgggttccaggaattacgacatgaagaccaggaagtggagtttccttctggag
gactatcccaggctaatgggagccatacagagccttccgtcaatagaggcagagccgctc
cccaagccagtgatacagacttttgctgctcagcttggagcaactaccacatgtgcagca
gacattcccgatgctgacctgtcagcggtggattccaaaatcgtggcaggcctcatgccc
ttccagagagaaggcgtcaattttgccatctcaagagaaggccgtttgctccttgcagat
gacatgggtttggggaagaccatccaggctatctgtattgctgcctattaccaaaaggaa
tggcctctactggtggtgacgccttcttcagtgaggtttacctgggctgaggcatttcat
aggtggcttccctccctgagcccagggagcaccaatgtcattgtgactggcaaggacagc
ctgacatcaggcttgatcaacatagtcagttttgaccttctcagcaagatggacaagcag
ctcaaagagactttccaagtgattattgttgacgaatctcatttcctaaagaacatcaaa
acagcacgatgccgagctgcgatgccgcttctcaaggctgccaaaagagtgatcctgctc
tcgggaactcctgccttgtcgcgtcctgctgagctgtatacccagattgcagccgtccga
cccagcttcttccctcagttccattcctttgggctccggtactgtgatgccaagaagatg
ccgtggggatgggactactccaggtcgtccaacctcggggagctcaagcttctcctggaa
gaatccatcatgatccgccgtctgaagtcggaagtgctctcccagcttccagcaaagcag
cgcacagtggtcgtggttgctcctgagggcattaatgcgaagaccaaggctgtgctggca
gctgctacgaaggagatggccaaaggatacaaaactaaacaagaggagaaggaagctctg
cttctcttctataacagaactgccgaagccaaaatccgctccgtcatagaatacatcctg
gacttacttgaaagtggaagagagaaattcctggtgtttgctcatcacaagatagtactg
gatgcaataagtgaggaactggagaaaaagcgcgttgggtatattcgcatcgatgggtcc
acgccgtcagccgagcgccaggctctgtgccagaatttccaggtctccgagaaactctgt
gtggctgtcttgtccatcaccgctgcaaacatgggggtgacgctctcttccgctgacctg
gttgtgtttgcagagttattctggaacccaggcgtcctgatccaggctgaagatagggcg
catcgcattggacagaccagttctgttagcattcactacctggtggcgaaaggcacagca
gatgtcttcttatggcctatgattcaggagaaaataaaagtactgggtgcagctggtctc
tctgaaaccaatttttctgaaacggctgaagccaccgactatttcatcaaggacccaagg
cagaagaccatttacgaccttttccagaagacctttgctgacgacggagatgaccttgac
gaagctttgtgtatggaggcagtcgacgcatgccaaaatcccgatcttggatgtgccggg
cagagtgcagaagacagctgttcagaaagcccacgtaagaagcagcgtatcgaggatttt
ttttgtaaacagtga
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