Alligator mississippiensis (American alligator): 102573974
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Entry
102573974 CDS
T03087
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat containing 6C
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102573974 (TNRC6C)
03036 Chromosome and associated proteins [BR:
amj03036
]
102573974 (TNRC6C)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102573974 (TNRC6C)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102573974 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
THOC7
UBA_NBR1_C
DUF3439
Motif
Other DBs
NCBI-GeneID:
102573974
NCBI-ProteinID:
XP_019349835
LinkDB
All DBs
Position
Un
AA seq
1718 aa
AA seq
DB search
MATGSAQGNFTGHTKKTNGNNGANGALIQSTSNQSALGAGGANGNGNSARVWGVATGSSS
SLAHCSASGGDGKMDNMIGDGRSPNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGA
GNPSSICSPVSAIGQNMGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLN
TDGPNNTNPMNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGTSVSQVSGGN
GEGMGNSVWGISPGNPATGNSNSGFSQGNGDTVNSALSAKQNGSSNAVQKEGNGASAWDS
GPPAGPGVLAWGRGSGNSGVGSMHSGAWGHPNRNTSNGVNGEWGKPPNQHSNSDISGKGS
TGWDSPSVTSQNPAMQQGNEQMNSWAKAAASGTTASEGSNDSGGCQNEGSTGREGAGEGR
RRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWG
CAATQSSNSGGKNDGSIMNSTNTSSVSGWVSSPPAAVPTNTGWGDNNNKAPNGPGGWGES
ASSTAVNNAAAAKSGHAWSGTANQEDKSPTWGEPQKPKSQNWGDGQKSNPSWTSGGGDWA
DSSSVPGHMGDGKKNGSGWDADNRSGSGWNDTTRSGTSGWGNGTNTKANTGTSWGESLKP
SPQQNWANKPQDNNVSSWGGAASVKQTGSGWVGGPVPPKQKDNSEATGWEEPSPPSIRRK
MEIDDGTSAWGDPNYNNNKTVNMWDRNNPIIQSSTTTTTTTTTTIINTNMAEPQPLHQSS
AQPNRSPLLGPAGWGEMPAVHTKTDASWGEPSSPSAAVDNGTSAWGKPPSSGAGWGDNSA
ESAGTYGRTSAPAAAPALCKPASKSMQEGWGSGGDEVNLSTSQWEDEEGDMWNNTASQES
NSSCNSWGNAPKKGLPKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNNMNLD
QAMSALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKESSMDRPTFLDKDGGLVEEP
TTSPFLPSPSLKLPLSNSALPNQALGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQAR
TMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHM
TMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLAQ
ALLMKQQPPTPHLSLHPSAGKSAMDSFSPHSQAPSLPDLQTKEQQSSPNTFAPYPLAGLN
PNMNVNSMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSKHGAIPGGLS
IGPPGKSSIDDSYGRYDLIQNSESPASPPVALPHSWSRAKTDSDKISNGSSINWPPEFHP
GVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPTSSQNATLPSSS
AWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSGPISHTQASLSHELWKVPRNTTAPT
RPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDNSGRTSSWLVLRNLTPQIDGSTLRT
LCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRF
LAQGQPLPPTSSWQSNTGTNQTRLGSTSSSHGLVRNDAGHWNTPCLSSKGSSDLLWGGVP
QYSSSLWGPPSTDDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atggctacagggagtgcccaaggcaacttcactggacatacaaagaaaactaatggcaat
aacggcgccaatggagcactcatccaaagcacttctaaccagagtgcccttggagctggt
ggagcaaatggtaatggaaactcagccagagtatggggtgtggccacaggctccagctct
agcctagctcactgctctgccagtggtggggatggaaagatggacaacatgattggagat
ggtagaagtccaaactgctggggtgcttccaactcaaatgctggcattaatcttaacctt
aaccctaatgccaatccagctgcctggcctgtactcggacatgaaggaactgtgggagca
ggcaacccttccagtatttgcagtccagtcagtgccataggtcaaaacatgggcaaccag
aatgggaacccaacaggcaccttaggtgcttggggaaatttgctgccgcaagagagcaca
gaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaac
actgatggaccaaataacactaaccccatgaactcttcaccaaaccctatcaatgcaatg
cagacaaatggactgccgaactgggggatggctgttggtatgggggccatcatcccgccc
cacctgcaaggccttcctggtgctaatggaacatcagtttctcaagtcagtgggggcaat
ggtgaaggaatgggcaattcagtgtgggggatatccccaggtaatcctgccacaggaaac
agcaattctgggttcagtcaggggaatggagacactgtgaactcagcattaagtgctaaa
caaaatggatccagcaacgctgtgcaaaaggaaggaaatggagcaagtgcatgggattca
ggacctccagcaggtcctggggtactagcatggggcaggggcagtggcaacagtggtgtt
ggtagtatgcattctggagcttggggccaccccaaccgtaacaccagtaatggtgttaat
ggtgaatggggcaagcccccaaaccagcattccaatagtgacatcagtgggaaaggatca
acagggtgggatagccctagtgttactagccagaatcctgccatgcagcagggcaatgaa
caaatgaactcttgggccaaagctgcagcatctggcaccacagctagtgaaggaagtaat
gatagtggtggatgtcaaaatgaaggcagtactgggagagaaggagctggagagggccga
aggagagacaaagggatgatagaccaagggcaagtccagttgccaaggaatgaccttgac
ccaagggtcctgtccaatactgggtggggacagactccggtaaagcaaaacactgcctgg
gaatttgaagaatccccaaggtctgaacgaaagaatgacaatgggacggaggcctggggt
tgtgcagctactcagtcttcaaactcaggggggaagaatgatgggtccatcatgaacagt
acaaatacctcttcagtatctgggtgggtcagctctccacctgcagctgttccaacaaat
acaggttggggagacaacaacaacaaagcgccaaatggcccagggggatggggagaatca
gcaagctctactgctgtcaataatgctgctgctgccaaaagcggccacgcttggagtggg
accgcaaatcaggaggacaaatcacctacctggggtgaacctcagaaacccaaatctcaa
aactggggagatggacagaaatcaaatccaagctggacttcaggaggtggagattgggca
gattcatcatctgtccctggacacatgggtgatgggaaaaagaatggatcgggatgggat
gctgacaatagatcagggtctggttggaatgatactacaaggtctgggaccagtggatgg
ggaaatggcacaaacaccaaggctaatacaggtacaagttggggggaatcattaaaacct
agcccccagcaaaactgggctaataaaccccaggataacaatgtgagttcctggggagga
gctgcttctgttaaacagactgggtcaggatgggttggtgggccagtgccacccaaacaa
aaagataacagtgaggcaactggctgggaagagccttcgccaccatccattcgccgcaag
atggaaattgatgatggtacctcagcttggggcgaccctaactacaacaacaacaagact
gtaaacatgtgggatagaaacaaccctataattcagagcagtaccaccaccactaccacc
accactaccaccattatcaacaccaatatggctgaacctcagccactgcaccagtcaagt
gcccagcccaaccggtccccactgcttggtccagcaggctggggagagatgcctgctgtc
cacacaaagactgacgcttcttggggagagccctcatccccttctgctgcagttgataat
ggcacttcagcatgggggaaaccccccagcagtggtgcggggtggggagataattctgcc
gagtcggcagggacatatggaagaacaagtgctccagctgctgccccagcactgtgcaaa
ccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgaagtgaatctcagt
actagtcagtgggaagatgaagaaggagatatgtggaataatactgcttcacaagagagc
aattcctcctgtaattcctgggggaatgccccgaagaaaggacttccaaagggcatgaag
acatctagcaagcaagatgaggcctggataatgaaccgtctgataaaacagctcacagac
atgggcttcccaagagaaccagcagaagaggccttgaaaagcaacaatatgaatcttgat
caggccatgagtgctctgctggaaaagaaggtggaaatggacaagcgtggaatgggagtg
accgattataatggaatggtcaccaaaccccttggctgccgcccaccaccaatctccaaa
gagtcttccatggaccgccccactttccttgacaaggatggcggcctagtggaagagccc
actacttcaccatttttgccttcaccaagcctgaagctccccctttcaaacagtgcactc
cctaatcaggccctgggcgggattgcctcagggctgggcatgcaaaacttgaattcttct
agacagataccaagtggcaatctgggtatgtttggcaatagcggagcagcacaagccagg
accatgcaacagccgcagcaaccgccagtgcaacctcttaactcatcccagcctagtctt
cgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgca
gcaaaaaacattggtctcaaccctgcactattaacctcgccaattaatcctcagcatatg
acgatgttgaaccagctctatcagctgcagctggcgtaccaacgtttacaaatccagcag
cagatgttacaggctcagcgtaatgtttccggacccatgagacagcaggagcagcaagtt
gcacgtacaatcaataacatgcagcagcagatccagcagcaccagcgccagctggcccag
gcactgctcatgaagcagcagcctcccactccacatctatctttgcacccctctgcaggc
aaatcagccatggatagcttttcaccccattcccaggctcccagcctccctgacctgcag
accaaagagcagcagtcttcaccgaacacctttgctccttaccctcttgctggactgaac
ccgaacatgaatgtaaacagcatggacattactggtggtttgtcagtgaaggatacttct
cagtcccagtctcgccttccacagtggacacaccccaactcgatggataatctgtctagt
gctgcttcttcacttgaccagaactctagcaagcatggtgctatccctggaggtctaagt
attggtcccccgggaaagtcctccattgatgactcttatggccggtacgatctgatccaa
aacagcgagtcaccagccagtccacctgtagcccttcctcatagttggtcacgtgccaaa
actgatagcgataaaatctccaatggctccagcattaattggccaccagaatttcatcca
ggggtgccatggaaaggactgcagaatattgaccccgagaatgatcctgatgtcactcct
ggaagtgttcccactgggcctaccattaataccaccatacaagatgttaatcgctatctt
ctcaagagtggagggtcatccccaacatcatctcagaatgccacgctgccttcatcgagt
gcctggccgcttagtgcctccggctacagtagctctttcagcagcattgcatctgcacct
agcattgcaggtaaattgtcagacatcaagtctacatggtcgtctggcccaatctctcac
acacaggcctctctatcccatgaactttggaaggtacccagaaacactactgctcctaca
agaccacctccaggcttaacaaacaccaagccatcatctacctggggtgccagcccactg
ggttggaccagctcttactcctctggttctgcatggagtactgacaactcaggaagaaca
agcagctggctggttctccgaaacctcacaccccaaattgatggttctacactgcggaca
ctgtgtttgcaacatggccctctaattacattccacctgaacctgactcaagggaacgct
gtggtccgatacagttccaaggaagaagcagccaaggcccagaagtctctgcatatgtgt
gttttaggaaacactaccatcttggctgagtttgctggtgaagaagaagtaaaccgtttc
ttagcacaaggccagccactgccacccacctccagttggcagtccaacactggaaccaat
cagactcgcttgggctctacaagcagctctcatggattggtgcggaatgatgcaggccac
tggaatactccttgcctgagtagcaaagggagcagcgatctgctttggggtggggtccct
cagtactcaagcagcctttgggggcccccaagcaccgacgatggcagggttattggaagc
ccaacacctttgaataccctgctcccaggtgatcttctcagcggggagtctatctag
DBGET
integrated database retrieval system
