Alligator mississippiensis (American alligator): 102574074
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Entry
102574074 CDS
T03087
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102574074 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amj03021
]
102574074 (SMARCC1)
03036 Chromosome and associated proteins [BR:
amj03036
]
102574074 (SMARCC1)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102574074 (SMARCC1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102574074 (SMARCC1)
PBAF complex
102574074 (SMARCC1)
GBAF(ncBAF) complex
102574074 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
102574074
NCBI-ProteinID:
XP_014459950
LinkDB
All DBs
Position
Un
AA seq
1084 aa
AA seq
DB search
GAAAAAPGWAALAVARRKDGGPTGKFWESPDTVSQLDSARVWLGKHYKKYVQADAPTNKT
LAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFLDFKAGGTLCHVLGAAYKYKNEQGWRR
FDLQNPSRMDRNVEMFINIEKMLVQNNCLSRPIIYLIPDIELKLANKLKDIVKRHQGTVT
EEKSKATHHVYPSPTSLDDDEWLRPVMKKDKQVLVHWGFYPDSYDTWVHASDMDAEIEDP
PIPEKPWKVHTKWILDTDVFNEWMNEEDYEVDENRKPASFRQRISMKNEEPVRSPERRDR
KAAASTRKRKHSPSPPPTPVESRKKTGKKGQAGLYGKRRGQKEEDEQEDLTKDMEDPTPV
PNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVAAGGKEDEDPNKGDQSRSIDP
GEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT
YRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFN
VLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKGA
SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDAS
LGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAH
VKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLDGAEEEKMETETDGQQSEKVESKG
EGEMEEGEKVQEGENERNPEKEQDSEVTADVKSEEKEAEENKENVDASKDKESDTGKKKV
EHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEEL
ETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQHSQNAQQSHQHSSGPG
MNPLGAPTHPGLLPHQQPPPYPMMHHQMPPPHPPQPGQMPGPGAMIPGQPVPGRMMPSVS
ANIHPPGSGPAPPGMPPMSGNIIGPRIPLAAPNGMYPPPSQQPPPPAEGVSAPAAGAPPA
SAAP
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
ggggcggcggcagcggcgccgggctgggcggccctggccgtggcgcggcgcaaggacggc
ggccccacgggcaagttctgggagagccccgacaccgtgtcgcagctggactcggcgcgc
gtctggctcggcaagcactacaagaagtatgtccaagcagatgctcctaccaataaaaca
ttggctgggctggtggtgcagctgctacagttccaggaagatgcctttggaaaacatgtc
accaatcctgccttcaccaaacttcctgcaaagtgcttcctggatttcaaagctggaggc
acgttatgtcacgttcttggtgctgcttacaagtataagaatgaacaaggatggcggagg
tttgatctgcagaacccatcccgaatggatcgtaatgtggagatgttcattaacattgag
aagatgctagtgcagaataattgtttgagcagaccaatcatctacctcattccagatata
gagctgaagttggctaacaagctaaaggatattgtcaaacgtcaccagggaacagtaacg
gaggagaagtcaaaggcaacccaccatgtttatcctagtcctacctcactggatgatgat
gaatggttgagacctgtgatgaaaaaggataagcaagtgctggtacactggggcttttac
ccagacagctatgacacttgggtgcatgctagtgatatggatgctgaaattgaagatcct
ccaattccagaaaaaccatggaaggttcataccaaatggattttggacacggacgtattt
aacgagtggatgaatgaagaggattatgaagtggatgagaataggaagccagcgagcttt
cggcagcgaatctctatgaagaatgaagagcctgtgcgtagtcctgagaggagagacaga
aaagcagcagcaagcaccaggaaaagaaagcattcaccttcccctcctcccactccagtg
gaatcaaggaaaaagactggaaaaaaaggacaagcaggtctgtatgggaaaaggagaggt
caaaaagaagaggatgagcaagaagatcttaccaaggacatggaagacccaacacctgta
cccaacatagaagaagtggtacttcccaaaaatgtgaacccaaagaaagacagtgaaaac
accccggtgaaaggaggaacagtagcagacctagatgaacaagatgaagagacagtggct
gcaggaggaaaggaagatgaagatcctaataaaggtgatcagagccgatcgattgatcca
ggtgaagacaacgtaaccgagcagacaaatcacatcattattccaagctatgcatcctgg
tttgactacaattgcattcatgtaatcgagcgccgtgctcttccagagttcttcaatggg
aaaaacaaatccaagactccagaaatatacctggcttaccggaacttcatgattgatacg
tatcgcttgaaccctcaggagtacttgaccagcaccgcttgccggcggaacctgaccgga
gacgtgtgtgctgtaatgagggtccatgcctttctggagcagtggggtctcattaactac
caagtggatccggaaagccgccccatggccatgggcccccctcctactcctcatttcaac
gtgcttgcggatactccctctggacttatgcctctccatatccgaactcctcaggtccct
gctgctcagcagatgttgagttttcctgaaaaaaacaaagaaaagcccactgacttgcag
aattttggactccgcacagacatttattcaaagaagaccttagcaaagagcaaaggagcc
agtgccggaagagaatggacggaacaagaaacactactgctactagaggctctggagatg
tacaaggatgactggaataaggtctctgagcatgttggcagccgtacccaggatgagtgt
attctccattttctgaggcttcccatcgaggacccgtacttggaaaactctgatgcatct
ctaggcccactggcttaccaacctgtgcctttcagccagtccggaaacccagtgatgagc
actgttgcttttctggcatctgtagtggatccccgggtggcgtccgctgcagctaaagct
gctttagaggaattttctcgggtgcgagaggaggtaccactggagcttgttgaagcccat
gtcaagaaagtacaggaagcagcaagagcctctggaaaagtggatccaacttatggacta
gagagcagctgcattgctggaacaggtccagacgagccagagaaattggatggagctgaa
gaagaaaaaatggaaactgagacagatgggcaacagtcagaaaaggtggaaagtaaagga
gaaggtgaaatggaggaaggtgaaaaagttcaggaaggagaaaatgagagaaatccagaa
aaggagcaagacagtgaagtgactgctgatgtcaagtcagaagagaaggaagcagaggag
aacaaggaaaacgttgatgcaagcaaagacaaggagagtgatactgggaagaagaaagtg
gaacatgagatctctgaaggaaatgtagcaacggctgcagctgcagctcttgcctcagct
gccaccaaagcaaagcacctggcagcagtggaagagagaaagatcaaatctttggtagcc
ctcctggtggaaacacaaatgaagaaactggagatcaagcttcgtcattttgaggagctg
gaaacgatcatggacagagagaaagaagctctagaacagcagaggcagcaactgctgaca
gagcgccagaacttccacatggagcagctgaaatatgctgaattacgggctcgccagcaa
atggagcagcagcacagtcagaacgcccagcagtcgcaccagcactccagcgggccgggc
atgaacccactcggggcgcccacgcatccgggcttgctgccccatcagcagccccctccg
taccccatgatgcatcaccagatgccccctcctcacccaccgcagccaggtcagatgcca
ggacctggtgcgatgatacctgggcagcccgtgccgggccggatgatgccaagcgtgtct
gccaacatccacccgccaggcagtggccctgcacccccgggcatgccgcccatgtcggga
aacatcatcggacctcgcattcccctcgcagctccgaacggcatgtatccccctccatcg
cagcagccaccaccgccagctgaaggggtgagcgcccctgccgcgggagcaccgccggcc
tccgcagccccctaa
DBGET
integrated database retrieval system
