Alligator mississippiensis (American alligator): 102574316
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Entry
102574316 CDS
T03087
Symbol
HFM1
Name
(RefSeq) HFM1, ATP dependent DNA helicase homolog
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102574316 (HFM1)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
102574316 (HFM1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Meiosis-specific proteins
Others
102574316 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
102574316
NCBI-ProteinID:
XP_019334576
LinkDB
All DBs
Position
Un
AA seq
1419 aa
AA seq
DB search
MLASTNAVFSLESLFYETPDTTQKYLENTGPKNWFLAPVPSIAEIPSTQELEKELEKNNH
LAQIPFDLTSNKQEVLELSLGKGDKSNLQHESLEVVSSFPYSDHEKYKNEIRPCQQPDRN
ISETRKLINFPEDDESTNSTFRKSLFKTTDFTYANKEHKDNFLFGSGTDISCKIIKNIKE
NKKELWKNNSMQVLQDSDFNLQSVNDVFSACENGKGVKVQSFLHASETSNVEGAVAKKME
VLRAVTEIPSPFRNIFKDFPYFNYIQSKALDDLLYTDRNFVICAPTGSGKTVMFELAITR
LLMEVPMPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLSCKELTGDTVVDDLFEIQHA
HIIMTTPEKWDSMTRKWRDNSLVQLVQLFLIDEVHVVKDESRGATLEVVVSRMKTVQSSF
SCSSENPNTVPSMRFVAVSATIPNAEDIAEWLTDDKKPAVCLKIDENFRPVKLRKVVLGF
PCSGNQTEFKFDLTLNYKIASVIQTYSEQKPALVFCATRKGVQQAASVLAKDAKFIMTTE
QKQRLQRSANSIKDSKLRDLLIYGVAYHHAGMELSDRKIIEGAFTVGDLPVLFTTSTLAM
GVNLPAHLVVIKSTMHYVGGMFQEYSETDILQMIGRAGRPQFDTTAAAVIMTRLSTREKY
VQMLNGADTIESSLHKHLVEHLNAEIVLHTITNVNIALEWIRSTFLYIRALKNPVHYGFS
PGLDRVGIEAKLQEQLQLFQVTKISSCTEFSDIKLRTSEKKILNALNKDKNRITIRFPME
GKIKTTEMKVNCLIQAQLGCIPIQDFTLTQDIGKIFRNGIRVTKWLSDFLAPQRNSFSAL
LNSLILAKCFRCRLWENSLHVSKQLEKIGVMLSNAMVNSGLTSFKKIEDTNARELELILN
RHPPFGNQIKESVIHLPKYALDIEQVSKYSDTVAEIIVTIILTNFKQLQTKRTAPDFHYV
TLIIGNADNEVVFKQKIIDSALLKTGNWTKKIEVKRALKSEELSINVISSDYVGLDIQQN
YTAFFLGAKRFGNQVAVHRKSDAESSLDVYHAPSIKASSARIDTGSTCNQEVSYTRPGNR
ECNHHCKNKDACGHDCCKIGVSQKSELKRDSKFSSYLSDLRNRSSISSVPPVKRLKMQLL
NRTQNVDLKHFVYTPNSLLPALPRSEYKESPASSVDQCENVDNLGRFQKQLQQESYGKIN
LSWKHSSAVGEKTHQAMMSNKNLESSMPNLTDADKSSSWFSKTLNVNFELGDEVWDDFDD
EKLIYACSFSSDVANKDLGSGSSCLQNTIQHKPLFQNTQYEVISDTSGNVGKLQDKMGVH
PQNSLSPTLNAPSKMKLPTQNGNTNNFSFQEKKHPNPSEVKKPFCSSNSGTVSESSKSSE
KGDFFICNKERKSEINLRYLPDDEANDVKPFLGIFDGIF
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgctggcatctacaaatgctgtcttttcattagaaagtttattttatgaaacaccggat
acaacgcaaaagtatctagaaaatacaggaccaaaaaattggtttcttgcacctgttcca
tctattgctgaaattcccagcactcaggagctagagaaggaattggaaaaaaataaccat
ctagcacaaattccttttgacttgacctctaacaagcaagaagtacttgagttaagttta
ggaaaaggagataaaagtaatttgcaacatgaaagtctggaagttgtttcatcatttcca
tattctgaccatgaaaaatataaaaatgaaatcaggccttgtcaacaacctgatagaaat
atttcagaaacgagaaaattaattaattttccagaagatgatgaaagtaccaactcaact
ttcagaaaaagcttatttaaaacaactgattttacatatgcaaataaagaacataaagat
aatttcctttttggcagtggaactgacatttcttgtaagataattaaaaatataaaagag
aataaaaaagagttatggaaaaataatagtatgcaggtacttcaggattcagatttcaat
ctgcaaagtgtaaatgacgtgttttctgcttgtgaaaatggaaaaggagtcaaagtacaa
tcatttcttcatgcttcagagacttcaaatgtggaaggagctgtagcaaaaaaaatggag
gtcctgagagctgttacagaaatcccttctccatttagaaatattttcaaggattttcca
tattttaactacatacaatccaaggctttggatgatcttctttacacagataggaatttt
gtgatttgtgctccaactggctctggaaaaactgtaatgtttgaactagctattaccagg
ctactaatggaagtgccaatgccttggttaaatattaaaattgtatatatggcacccata
aaagctctgtgcagtcagcgatttgatgattggaaagagaaatttggacctattgggctt
agctgtaaggaactgacaggagatacagtcgtggatgatttatttgaaatacaacatgct
catattattatgaccacgccagaaaaatgggatagtatgactagaaaatggagagacaac
tctttagtccagctggtacaattattcctcattgatgaggtacatgttgtgaaagatgaa
agccggggtgcaacacttgaggtggtagtcagtcggatgaaaacggtacaatcttccttt
tcatgtagctcagagaatcccaacacagttccttccatgagatttgtggctgtttctgca
acaatcccgaatgctgaagatattgcagaatggctgacagatgataagaagcctgctgta
tgtttgaaaatagatgagaatttccgaccagtgaagcttcgcaaagttgttcttggattt
ccctgcagtggcaaccaaacagaatttaaatttgacttaactcttaactacaaaatagca
agtgttatacaaacatactctgaacaaaaaccagcacttgtgttttgtgccacaaggaaa
ggagtacagcaagctgcttctgttcttgcaaaagatgctaaattcataatgactacagaa
cagaaacaaagattacaacggtctgcaaattcaataaaagattccaaactaagagatctc
ttaatatatggtgtggcttatcatcatgctggtatggagttatctgatagaaaaataatt
gaaggagcatttactgtgggagacttgcctgtactttttactactagtaccttagctatg
ggagtaaatttacctgcacatctggttgttataaaatccacaatgcattatgttggagga
atgtttcaagaatatagtgaaactgatattctgcaaatgattgggagagcaggaagacca
caatttgacacaaccgctgcagctgttattatgactcgcttaagtacaagagagaagtat
gtacagatgttaaatggtgcagatacaatagagagcagtttacataaacatcttgttgag
catttaaatgcggaaatagtgctgcataccataacaaatgtgaatatagctttggaatgg
ataagatcaactttcctatacatcagagctctgaaaaatccagttcattacggtttttca
cctggattagacagagttggaattgaagcaaagttacaagaacaattacaattgtttcag
gtcacaaagatatctagctgcactgaattttcagatatcaagttaagaacaagtgaaaag
aaaatactgaatgctttgaataaggacaagaacaggataactatcaggtttccaatggaa
gggaagataaaaacaacagaaatgaaagtaaactgtcttattcaggctcagctaggatgc
attcctattcaagactttactttgacgcaagatataggcaaaattttcagaaatggcata
agagttactaaatggttgtctgactttctggcaccacagagaaacagcttttctgcacta
ttaaactccttaattttagctaagtgtttcagatgcagactgtgggaaaactcactgcat
gtttccaaacagctggaaaaaattggtgtgatgctgtcaaatgcaatggtaaattcaggt
ctgacatcatttaaaaaaatagaagatacaaatgcaagagaacttgaattgatcttaaac
agacaccctccttttggaaaccaaataaaagagtctgtgatacaccttccaaaatatgca
cttgatattgagcaggtttcaaaatacagtgatacagtggctgaaatcatagtgactatc
atattaacaaacttcaaacaactgcagacaaagagaacagcaccagatttccattatgta
accttgataataggaaatgctgataatgaagtcgtttttaaacaaaaaattatagattcg
gccttgctgaaaactggaaattggactaaaaaaattgaagtgaaaagagctcttaaatca
gaggaacttagcataaatgtaatcagttctgactatgttgggcttgatattcagcaaaac
tatacagcctttttcttaggagcaaaaaggtttggaaatcaagtagctgtacacagaaaa
tcagatgctgagtcttcacttgatgtatatcacgcaccttcaataaaagcatcttcagca
agaatagatactggaagcacttgtaaccaagaggtctcctacacaagacctgggaacaga
gaatgcaaccatcactgtaagaataaagatgcctgtggacatgactgctgtaaaattgga
gtttctcagaagtctgagttgaagagagattcaaaattttcttcatacctatctgactta
aggaacagaagctcaatttcatctgtacccccagtgaaacgattaaagatgcagctactg
aatcgaactcagaatgtggatcttaaacactttgtttatacacccaactctttgctgcca
gcattgccaagatctgaatacaaagagtctcctgcatcttcagtagatcagtgtgaaaat
gttgataaccttggaagatttcagaaacaactacaacaggagagctatggaaagattaat
ttatcttggaaacattcttcagctgtgggtgagaagacccatcaggcaatgatgtcaaac
aaaaatcttgaatcttcaatgcctaacttgactgatgcagataaaagcagctcttggttt
tcaaagactctgaatgtgaacttcgagttgggagatgaggtttgggatgattttgatgat
gagaaattaatatatgcttgcagcttttccagtgatgtggcaaataaagatttaggatct
ggaagctcctgccttcaaaatacaatacaacataaaccactattccagaacacacaatac
gaagtcataagtgacacttcaggaaatgttggcaagttgcaagataagatgggtgttcat
ccacagaattctctctcgcccacattaaatgcgccatcaaaaatgaaattaccaacacag
aatggaaatacaaataatttcagctttcaagaaaaaaaacatcccaatccttctgaggta
aaaaaaccattttgttcttcaaactcaggaacagtctcagagtcttctaaaagcagtgaa
aaaggggatttttttatttgtaataaagaaagaaaaagtgaaattaatctcagatatctt
ccagatgatgaagccaatgatgttaagccttttcttggaatatttgatggtattttctaa
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