Alligator mississippiensis (American alligator): 102575036
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Entry
102575036 CDS
T03087
Symbol
AFDN
Name
(RefSeq) afadin, adherens junction formation factor
KO
K05702
afadin
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04517
IgSF CAM signaling
amj04520
Adherens junction
amj04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
102575036 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
102575036 (AFDN)
04530 Tight junction
102575036 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
102575036
NCBI-ProteinID:
XP_014452262
LinkDB
All DBs
Position
Un
AA seq
1615 aa
AA seq
DB search
MRFYFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGER
RLDIDEKPLVVQLNWNKDDREGRFVLKNENDTLPPKKAQSNGPEKQEKEGVIQNFKRTLS
KKEKKEKKRREKEALRQASDKDDRPFHGDDIENSRLAAEVYKDMPETSFTRTISNPEVVM
KRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEAL
EKYGLEKENPKDYCIARVMLPPGSQHSDDKSAKEIILDDDECPLQIFREWPSDKGILVFQ
LKRRPPDYIPKKSKKQTDGKPLKGKERVDGSGYGSCLPPEKLPYLVELSPGRRNHFAYYN
YHTYEDGSDSRDKPKLYRLQLSVTEIGTEKFDDSSIQLFGPGIQPHHCDLTNMDGVVTVT
PRSIDAETYVEGQRISETTMLQSGMKVQFGSSHVFKFVDPSQDHIIPKRPLDAGLMVKGP
RHKTGVVQETTFDLEGDVHSGTALPASKSTNRLDGDRTSSASSTAERGMVKPMIRIEQQQ
EYRRQDGRSQDTYGPELVLPASIEFRESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTC
RYVLSSQYRPDITPTERTHKVIAIVNKMVSMMEGVIQKQKNIAGALAFWMANASELLNFI
KQDRDLSRITLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDENNPQRPKIDDVLH
TLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLG
HIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSHDDIPHINSTCFKLNSLQLQALLQN
YHCASDEPFIPTELIDKVVAVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDV
VRNIPNGLQEFLDPLCQRGFCRLTPHPRSPGTWTIYFEGADYESHLLRENAELAQPLRKE
PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR
SLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVSDRRGAGKPRP
KSEGFELYNNSAQNGSPESPQLPWTEYNEPKKLPGDDRLMKNRADHRSSPNVANQPPSPG
GKNAYACGTTTKITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTREYFTFPASKSQDRMGP
AQNQWPNYEEKPQVQAESSHSISAAMQRVARSQEELRDQVFQPERNRLEVVIRKDVEYID
RKSDSDPWMNSSVDSSTSSQEHLNHSSKPISPGSCLTKSGPGRWKTPATSQPTPVAVSQP
IRTDLPPPPPPPPVHYAAEFDELQMDLPLPPPPPPNQLGTPASSQVAAAERKKREEHQRW
YEKEKARLEEERERKRREQERKLGQMRAQPLIPSQPMVPPVSVQQVKPEKPSTLQRSQET
VIRELQPQQQPRTIERRDLQYITISKEELSSSDSLSPDPWKRDAKEKLEKQQQMHIVDML
SKEIQDLQNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDMDAMLIMQR
LEAERRARDEERRRQQQLEEMRKREAEDRARQEEERRRQEEERTKREAEEKVMVL
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgagattttattttcaagataaagcagctggaaattttgcaacaaaatgtatccgtgtg
tctagtactgctacaacacaagatgtaatagaaactttggcagagaaattccgtcctgac
atgcgaatgttgtcatcccctaaatactcactttatgaagtacatgtcagtggagaaaga
agattagatatagatgagaagccccttgttgtacagttgaattggaacaaagatgacaga
gaagggaggtttgttctcaagaatgaaaatgatacacttcctccaaagaaagctcagagt
aatggccctgaaaaacaagaaaaagaaggggttatccagaacttcaaacgaacgctatca
aaaaaagagaaaaaagaaaaaaagaggcgagaaaaggaagcactgcgacaagcatcagat
aaagatgatagacctttccatggagatgatattgagaattctcgtcttgcagcagaggtt
tacaaagatatgcctgagaccagcttcacacgcacaatatccaatcctgaggtagtcatg
aaacgccgacgacagcaaaaactagagaagagaatgcaggaattccgcagctctgatggt
cggccagactcaggagggacgctcagaatttatgcggacagcttaaaaccaaatatacca
tacaagacaatcctgctgtccactacagatactgcagactttgcagttattgaagctctg
gagaagtatggtttggaaaaagaaaatccgaaggattactgtattgctcgtgttatgctt
cctcctggttctcaacattcggatgataaaagtgctaaagaaattatccttgatgatgat
gagtgccctcttcagatattcagggaatggcctagtgacaaaggaatattagtgtttcag
ttgaaaagacgtcctcctgactatatcccaaagaaatccaagaaacaaactgatggaaag
ccattaaaggggaaggaaagagttgatgggtctggctatggctcttgccttcctcctgag
aaactaccgtatctggtagaattaagcccagggagaaggaatcactttgcctactacaac
tatcacacttacgaagatggttctgactccagagataagccaaagctttatcgtctacaa
ttaagtgttactgaaattggaacagaaaaatttgatgacagttccatccagttgtttggt
ccaggaattcagccacaccactgtgacctcaccaatatggatggagttgttactgttacc
ccaagaagcatcgatgctgagacttatgtggaaggtcagcgtatttcggagaccactatg
ctgcagagtggcatgaaagttcagtttgggtcttctcatgtatttaaatttgtggatccc
agtcaggatcatattattcctaaaagacctttggatgctggtctcatggtcaaaggtcca
agacacaaaactggagttgttcaggaaacaacctttgatctggagggagatgttcacagt
ggaacggcattaccagcaagcaagagcaccaacagactagatggtgacagaacatcatcg
gcatccagcacagctgaacggggcatggtgaagccaatgatcagaatagagcaacaacaa
gaataccgcagacaggatgggagatctcaggacacgtatgggccagaactcgtattacct
gcgagcatcgaatttagggaaagttctgaagatgccttcttatctgccattataaattat
accaatagttcaacagttcattttaaactatctcctacttatgttttgtacatgacttgt
cggtatgtattgtcaagccagtacagacctgacattactcctactgagcgtactcacaaa
gtcattgcaatagtcaacaagatggtgagcatgatggaaggagttatccagaagcaaaag
aatattgctggggcacttgccttctggatggcaaatgcatctgagctgctcaattttata
aaacaagaccgagatctcagccgaattactttagatgcgcaagatgttttggcacatttg
gttcaaatggctttcaaatacctggttcactgtcttcagtcagagcttaacaactacatg
cctgcattccttgatgatgaaaataatcctcaaaggcctaaaatagatgatgtcttgcat
acgttaactggagctatgtccctgttgcgacgatgtagagtgaatgctgcactaactata
cagctcttctcccagctgtttcattttatcaacatgtggctttttaatagacttgttact
gatccagattcaggattgtgctctcattactggggagccatcattcgccagcagttgggc
catattgaggcctgggcggaaaagcagggcctagaactggctgctgattgtcacctaagc
aggatagtgcaggctactacactgcttaccatggataagtactcacatgatgacattcca
catattaacagtacctgctttaagttgaattccctacagttacaagcactgttgcagaat
tatcactgtgcttcagatgaaccatttatcccaacagagcttatagataaagtagtagct
gtcgcagaaaatacagctgatgaactagctcgtagtgatggcagagaagttcagctggaa
gaggatcctgatctacagctgccttttcttctgccagaagatggctattcatgtgatgtt
gtcagaaacatcccaaacggtttacaagaatttttagatccactgtgccagagaggcttc
tgcaggctaacacctcatccacgttcaccagggacttggacaatatattttgaaggtgca
gactatgaaagtcacctgttacgtgagaatgctgagctggctcagcctttgaggaaagaa
cctgaaatcatcacggtgacactaaaaaaacaaaatggaatgggcttaagcattgttgct
gctaagggcgcaggtcaagataaacttggaatctatgtcaaatctgttgtaaaaggaggt
gctgcagatgtggatggtcgcctggcagcaggggatcaactgctcagtgtggatggtaga
agtttggtggggctgtcccaagaaagggcagcagaactcatgacaagaacaggttctgta
gtgaccctggaagtagcaaagcaaggagcaatttatcatggtctggcaaccctgcttaac
caaccatccccaatgatgcagagagtttctgaccggcgtggcgcaggtaaaccccgacca
aagagcgaaggttttgagctgtataataactctgctcaaaatgggtcacctgagagccct
cagctgccttggacagagtacaatgaaccaaagaagcttccaggggatgacagattaatg
aagaatcgagctgatcaccgctccagtccgaatgtggcaaatcagcctcccagtcctgga
ggaaagaatgcttatgcttgtggaaccaccaccaagataacttcagtctcaactgggaat
ctctgtacagaggaacagacaccaccaccaagacccgaagcttatcctatccccacacaa
acctacaccagagaatatttcacattcccagcttccaagtcccaggatcgaatgggtcct
gctcagaatcaatggccaaattatgaagaaaagccacaagtccaggcagagagtagtcac
tcaatcagtgctgcaatgcagcgtgtggctcgttctcaggaagaactgcgagatcaagtt
ttccagccggagaggaatcgtttggaagtggttatacggaaggatgtggagtacattgat
cgcaagtcggacagtgatccatggatgaattcatctgtggattccagcacatctagccaa
gagcatctgaaccattcatccaaacccatttcccctggttcatgtttaactaaaagtgga
cctggccggtggaaaactccagctaccagccagccgacccctgtggcagtttcccagccc
attagaacagacctacccccaccaccacctcctccaccagtgcattatgcagctgaattt
gatgaactgcaaatggatttgcctcttccacctcctcctcctccaaaccagctaggaaca
ccagcatcttcccaggtagctgctgcagaacgtaaaaagagagaggaacatcagcgatgg
tatgaaaaagaaaaagcacgtttggaggaagaacgagagaggaaacggcgtgagcaggaa
aggaaactgggccagatgcgggctcagccactaattccttctcagcctatggttcctcct
gtttctgttcagcaggtaaaaccagaaaagccttcaacattgcagaggtcccaagaaact
gttattcgagagttacagccccaacagcaaccccgaaccattgagcgaagagatctgcag
tacattactatcagcaaagaagaactatcttccagtgatagcttgtctcctgatccctgg
aagcgggatgcaaaggagaagctggagaagcagcaacagatgcacattgtggacatgctg
agtaaagagatccaggatcttcagaacaagcccgatcgcacagcagaggagaatgaccgc
ctacgcaaactcatgcttgagtggcagttccaaaaacgacttcaggagtcaaagcaaaag
gatgaagatgatgaagaagaagaagacgatgatatggatgccatgctaattatgcagcgg
ctggaggctgaaagaagagcaagggatgaggagcgccgacggcagcagcagttggaagag
atgcgtaaacgagaagcagaagatagggccaggcaagaagaggagcgccggcgacaggag
gaggagcgaaccaagagagaggctgaagaaaaggttatggtcctctga
DBGET
integrated database retrieval system
