Alligator mississippiensis (American alligator): 102575097
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Entry
102575097 CDS
T03087
Symbol
ARID1B
Name
(RefSeq) AT-rich interaction domain 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102575097 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102575097 (ARID1B)
03021 Transcription machinery [BR:
amj03021
]
102575097 (ARID1B)
03036 Chromosome and associated proteins [BR:
amj03036
]
102575097 (ARID1B)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Helix-turn-helix
ARID
102575097 (ARID1B)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102575097 (ARID1B)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102575097 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
102575097
NCBI-ProteinID:
XP_019335257
LinkDB
All DBs
Position
Un
AA seq
2197 aa
AA seq
DB search
MIMAAQVAAAPAGANNSKGKAPGLPGSLSQERGAAAGGGGGSMLGAGDGGGLGSVLQHRA
ELGTANNADKDGGGAAPMDAGLLPNHKLKGGEALHPHHALHHAHHHHHHHHHLGAFPPQQ
QQQPPPPPQQQAAAPHHAMQKSGAAQPSADMEQQHGGKDGAGGAQAEPPPPLLSKGGPEE
EEEEEEEKLGEPRYEHPALGAQQQQQPAPGKAAAAGGGFQRFSSQSPHPSGATPTLNQLL
TSPSPMMRSYGSGYAEYSSPGAPPPQPQPQAQAAAAAPGSQQAAAGMGLAKDMGSQYGAA
SPAWAAAQQRSHPAMSPGSTAQPLSRTQGSPMDPMVMKRPQLYGMGSNPHSQTQQSSPYP
GQSYGPPGPQRYPMAMQGRTPAAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQ
PQHLPPQAQYLSQAQQRYQTQQDMSQEGYGTRSQPPIAPGKPNHEDLNLIQQERPSSLPV
EVLASEDATFGHKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGEQSNPAQSPFSPHASP
HLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPSGSQSESSSHPALSQSPM
PQDRGFIAGMQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGIGSFQQSNSSGTYGPQMSQ
YGPQGNYSRPPTYSGVPNTSYSGPGPGMGINANSQMHGQGPSQPCGTMPLGRMPSAGMQS
RPFPGNMSSMTPNSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRPPYIRS
PAYPSQSGAGGRPMFSSQHPNYGNAQAPMMHQPDQYGQGSFPGMNQSGIMGSSSPYTQPM
NNSSSLMNPQAPPYSMAPNMVNSSTAPMGLADMMTPGESKLPLPLKADGKEEGPPQPESK
SKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSS
TTTGEKITKIYELGNEPERKMWVDRYLTFMEERGTPVASLPAVGKKPLDLFRLYVCVKEI
GGLAQVNKNKKWRELATTLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTG
DTKKQPKIQPPSPANSGSLQGPQTPQSTGSNSMTEVPGDLKPPTPASTPHGQMTPMQGGR
NSAVSVHDPFSDVSDSAFPKRNSMTPNAPYQQGMNMPDMMGRMPYEPNKDPFGGMRKVPG
SNEPFMTPGQMPNSGIQDMYNQTPSGAMSNMSMSQRQQFSYGSSYDRRSDHGLGSEGSMG
PPGQSNMVPSNSDPSMYSPNRYPGQQRHETYAQQYPGQGPPSGQPAYGGHQPGMYPQQQN
YKRHMDGMYGPPAKRHEGEMYNMQYGNQQQEMYNQYSNTYSGPDRRPMQGQYPYPYNRER
MQGPGQIQQHGIPPQMIGGPMQSSSTSEGPQQNMWPTRNDMPYPYQNRQGPGGPTQAPPY
PGMNRTDDMMVPDQRINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNH
ISRAPSPASFQRSLENRMSPSKSPFLPSMKMQKVMPTVPVSQVTGPPPQPPPIRREITFP
PGSVEASQPVLKPRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVA
TFNLSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPGKKALDHNTAKKDDSQSLAEDTV
KEEDNDECINYLEEEEEEEEDEKSEGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIV
KKNNLFVVDRSDKLGRVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNS
PNKKKELEGKGDSEEQQEKSITATIDDVLSARPGALPEDSSSGSQAESSKFPFGIHQAKS
HRNIKLLEDEPRSRDETPLCAITHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLV
LILGKLILLHHEHPERKRAPQTYEKEDEEDKGVACSKDEWWWDCLEVLRDNTLVTLANIS
GQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQ
DNNVDLILATPPFSRQEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQ
KGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENR
SEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
6594 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtggcagcggctccggcgggggcgaacaacagcaagggcaaa
gcgccgggcttgccgggcagcctgagccaggagcgcggcgcggcggcgggcggcggcggg
ggctccatgctgggcgccggggacggcggcggcctgggcagcgtcctgcagcaccgcgcc
gagctgggcacggccaacaacgcggacaaggacggcggcggcgcggccccgatggacgcg
gggctgctccccaaccacaagctgaagggcggcgaggcgctgcacccgcaccatgccctg
caccatgcccaccaccaccaccaccaccaccaccacctcggcgccttcccgccgcaacag
caacagcagccgccgccgccgccgcagcagcaggcggcggctccgcaccatgccatgcag
aagagcggcgctgcgcagcccagtgcagacatggagcagcaacatggaggcaaggacggc
gcggggggcgcccaggccgagccgccgccgcccctgctgagcaaaggcggcccggaggag
gaggaggaggaggaggaggagaagctgggcgagccgcgctacgagcacccggcgctgggc
gcgcagcagcagcagcagccagcgccgggcaaggcggcggcggcgggcggcggcttccag
cgcttctccagccagagcccgcacccgtccggggccacgccgacgctcaaccagctgctc
acgtcccccagccccatgatgaggagctacggcagcggctacgccgagtacagcagcccc
ggcgccccgccgccccagccccagccgcaggcgcaggcggccgccgcggcccccggcagc
cagcaggcagcggcgggcatgggcctggccaaggacatgggctcgcagtacggggcggcc
agcccggcctgggcagcggcgcaacaaaggagtcacccggccatgagcccgggcagcacc
gcgcagcccctcagcaggacccagggcagcccaatggatccaatggtaatgaagagacct
cagttatatggaatgggcagtaaccctcattctcagacacagcaaagcagtccataccca
gggcagtcatacggccctccaggaccccagcgatatccaatggcaatgcagggacggacc
ccagctgccatgggtggaatgcagtatccacagcaacagatgccacctcagtatggtcag
caaggtgtaagtggctactgccagcagggccaacagccatattacaaccagcagccacag
cctcagcatcttccaccccaggcacagtatctgtcacaggcccagcagaggtaccagaca
cagcaggacatgtctcaggaaggctatggaacccgatcccaaccccctattgccccagga
aagcccaaccatgaagatctaaacctcatacaacaagaaagaccatcaagcttaccagtt
gaagtcttggcctcggaggatgctacatttggacacaaggatttatctggctccattgat
gacttgcccactggaacggaggcaacactgagttcagcagttagtgcatcaggttctaca
agcagccagggggagcagagcaaccctgcacagtcacctttttcacctcatgcttctcca
catctctccagcatccctggtggtccatcgccttcccctgtaggctctcctgttggaagc
aatcagtcacgttctggtccaatttctcctgcaagtattccaggcagtcagatgccacct
caaccttctggcagccagtcagaatccagctcccatcctgctttgagccagtcaccaatg
ccacaagatcgaggttttatagcaggtatgcaaaggaacccacaaatgtcccagtatgga
cctcagcaaactggaccttccatgtcgccgcacccttcacctggaggccaaatgcatcct
ggaattggtagctttcagcagagtaattcaagtggaacgtatgggcctcaaatgagccag
tatggaccacaaggaaattattccagaccaccaacgtacagtggggtgcccaacacgagt
tacagtggcccaggacctggcatgggtataaatgccaatagtcagatgcatggacagggg
ccaagccagccttgtggaaccatgcccctgggacggatgccatcagctgggatgcagagc
agaccatttcctggaaacatgagcagtatgacccccaattctcctggcatgtctcagcag
ggaggtccgggcatgggcccaccaatgccaactgtgaaccgtaaggcacaggaagcagct
gctgcagtgatgcaggctgctgcaaactccgctcagagcaggccaccatacattaggtcg
cctgcttatcccagccagtctggggctggcggacgccccatgttttcttcacagcacccc
aactatggcaacgctcaggctcccatgatgcaccagcctgatcagtacgggcaaggcagt
tttcctggcatgaatcagagtggtattatgggatccagttctccttatacccagccaatg
aacaacagctctagcctgatgaacccgcaagctcctccttacagcatggcacctaacatg
gtgaacagttcaacagcacctatgggtcttgcagatatgatgacacctggtgagtccaaa
ctgcctctccctctcaaagcagatggcaaagaagaaggacctccgcagcctgagagcaag
tcaaaggatagctacagctcacagggtatttctcagcccccaaccccaggcaacctgcca
gtcccttccccaatgtccccaagctctgctagcatctcctcatttcatggagatgaaagt
gatagcattagcagcccaggctggccaaagactccatcaagccctaagtcaagttcctcc
accacgactggagagaagatcacaaaaatctatgagctgggaaatgagcctgagcgcaaa
atgtgggtagatcgatacctcaccttcatggaagagagaggcacacctgtggccagtctg
ccagctgtgggcaagaagccactagatctgttcagactgtatgtctgtgtcaaggagatt
ggaggcttagcacaggttaataaaaacaagaagtggcgtgaactggcaaccaccctgaat
gttggtacttcgagcagtgcagccagctccctgaaaaaacaatatattcagtacctgttt
gcctttgagtgcaagattgaacgaggggaggagccccctccagaggtcttcagcactgga
gatactaagaaacaacctaagattcagccaccatctcctgctaattccggttccctgcaa
ggtccacagactcctcaatctactggtagtaattccatgacagaagtgccaggcgacttg
aagcccccaacaccagcatcaacacctcatggacagatgacacctatgcagggtggcagg
aacagtgcagttagtgtgcatgatcctttctctgatgtaagtgactcagcattcccgaag
agaaactccatgacgccaaatgcaccgtaccagcaggggatgaacatgccagatatgatg
ggaaggatgccctatgaaccgaataaggacccttttggtgggatgagaaaagtgcctgga
agcaatgagccgttcatgacccctggacagatgcccaacagtggaatacaggacatgtat
aaccagacgccatctggagcaatgtccaacatgagcatgagccagcgacagcagttctct
tatggaagtagctatgacaggaggtcggatcatgggctgggttctgaaggcagtatggga
ccacctggtcaaagcaacatggtgccttcaaacagtgacccaagcatgtactctcctaat
cgttaccctggccagcaaaggcatgaaacatatgcacagcagtacccaggacaaggacct
ccctcaggacaaccagcatatggaggacatcaacctggaatgtatccacagcagcagaac
tacaagcgtcatatggatggcatgtatgggcccccagcaaaacgtcacgaaggagaaatg
tataacatgcagtatggcaaccagcagcaagaaatgtataaccagtacagcaacacttac
tctggaccagacaggaggcccatgcagggacagtatccgtatccatataacagggagagg
atgcagggcccaggacaaatacagcagcatggaataccaccccaaatgataggcggcccc
atgcagtcatcatccaccagtgaaggtcctcagcaaaacatgtggccaacccgaaatgat
atgccttacccttaccagaacaggcaaggccctggaggccccacacaggccccaccctat
ccagggatgaatcgcactgatgatatgatggtacctgatcagaggataaaccacgagagt
cagtggccttctcatgtcaaccaacgtcagccttcttatatgtcatcctcagcctccatg
cagcctatcactcgacctcctcagtcgtcctaccagacaccaccctcaatgccaaaccac
atctctagggctccaagtccagcatctttccagcgctctttggagaatcgtatgtcccca
agcaagtctcctttcctaccctctatgaagatgcaaaaggttatgcccacagttccagta
tcacaggtcacaggtcctccaccccagccaccacccattaggcgagaaattaccttccct
ccaggctctgtagaagcatcacagccagtcttaaaaccaagacgaaagattacctcaaaa
gatattgtaactcctgaagcctggcgagtgatgatgtctctaaaatctggacttttggct
gaaagtacctgggctctagatacaattaatattcttctgtatgatgacagcactgttgct
actttcaacctctctcagttatctggatttcttgagcttttggtggaatattttagaaaa
tgcctgattgacatttttggaatccttatggaatatgaagtgggagatccaggaaaaaaa
gcacttgatcacaacacagccaagaaagatgacagccagtccttagcagaggacactgta
aaagaggaggataatgatgaatgtattaattatttggaggaggaggaggaggaggaagag
gatgaaaaatctgaaggagaagaaaagagcattgttttttccactcctggtgccattgct
gatccaagtgagaggccaaaacaagccagtaaatttgacaagctgccaataaagattgta
aagaaaaataatctatttgttgtagaccgatctgacaaactcggacgtgttcaggaattt
gacagtgggctcctccactggcagcttggtgggggtgacacaactgaacacatccagact
cattttgaaagcaagatggagattcctccacgcaggaaagcacctcctcccttgaactct
ccaaacaaaaagaaggagttggaggggaaaggtgactctgaagaacaacaggaaaaaagt
ataacggccaccattgatgatgtcctctcagctcggccaggagcattgcctgaagactca
agctctggttcccaggcagagagcagtaaatttccctttggaatccatcaagccaaaagc
caccggaatattaaactgctagaggatgagccaaggagccgggatgagactcctctatgc
gccataactcattggcaagactccttggccaagcgctgcatctgtgtgtcaaatatcgtc
cgtagcttgtcttttgtgcctggcaacgacgccgaaatgtccaaacatccaggcttggtg
ctgatcttgggaaagttgatccttcttcaccatgagcatccagaaagaaagcgagcacca
cagacatatgagaaagaggacgaggaggacaaaggggtggcctgcagcaaggatgagtgg
tggtgggactgcctcgaagtcttgagggataatacattggtcacattagccaacatttct
ggacagctagacttgtctgcttacacagaaagcatctgtttgccaattttggatggcttg
ctgcactggatggtgtgcccatctgcagaggcacaggatccttttccaaccgtggggccc
aactcagtcctatcacctcaaagacttgtgctggagaccctgtgtaagctcagtatccag
gacaataatgtggaccttatcttggccactcccccattcagtcgtcaggagaaactctac
gctactttagttaggtacgttggggaccgcaaaaacccagtctgccgagaaatgtccatg
gctctcttatcaaaccttgcacagggggacacattagcggcaagggcaatagctgtgcag
aaaggaagcatcggaaacttgataagcttcctggaagatggggtcacgatggcccagtac
cagcagagccaacataacctcatgcacatgcagccacctcctctggagccacctagcgta
gacatgatgtgcagggcagccaaggccttgctggccatggctagagtggacgagaaccgt
tcagagttcctattgcacgagggtcgtttgctggatatctcaatatctgctgtcctgaac
tctctggttgcatctgtcatctgtgatgtacttttccagattgggcagttatga
DBGET
integrated database retrieval system
