Alligator mississippiensis (American alligator): 102575585
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Entry
102575585 CDS
T03087
Symbol
CHD9
Name
(RefSeq) chromodomain helicase DNA binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102575585 (CHD9)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102575585 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
102575585
NCBI-ProteinID:
XP_014458833
LinkDB
All DBs
Position
Un
AA seq
2891 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDTLNHVQDTQ
AQQKMSEFEQLNQYDSLKLHQVNQSFNSPADSVLSPHSQFSCSPIHPPNQSNGMFPDVAD
GSPMWGHQTATAIPNQNGSPFHPGHSQTMQQNKSFVAHHDFALFQANEQQHQCASLRSQQ
SRNNANSGQDTLSQPKNFMEVNVSASHRVNVTHPPPVANPSASQQPLPVKPFSQTATASI
HFCGNQEGNFDGQSPTMTSCPVSNTQQFSYSYSNNHISSTSLLQSSTTLSSSQQTHPLSD
FTGSDAFTPRAGTKQETTEHLLNPNTPLNSNSFQMLHSAHPQGNFSSSKLSPVNISFPAS
AGSSQISHFSDPIESNGFSSLDESLLHQVESQGEPFTGLDPEDLLQEDLLPQFDDSAFVQ
DSSSHVLEHDLEHHITPQQVTQSSDIVRTQSQQSRMHPWHSSVSNQHVQGRNRVTLQGQP
PSSKKTDGSGAYTKLQNTQVRAMSEKKQKKKVESESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKIKSKPKDKESKKPRTGSSSKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRSFKDEDLQKRRSNRQVKRKKYAEEGEGKQSEEEAKVSVK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRIVKKEVSAGVTVEAEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSF
CEDKDTGEPVVYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LTGIRGPFLIIAPLSTITNWEREFRTWTDINVVVYHGSMVSRQMIQQYEMYFRDSQGRII
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFRETHSPTAPDFHLQAMIHSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIEAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEPESEGDEKPKLRRPCDRSSGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNDFQKVFDGADASEIDIWVPEPDHSEVPAEWWDADADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYIDGDVEDPEYKPAPAM
FKDDMEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTNKNRQTQQ
IQPAFPVQASMMQPSYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPDRGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPGIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYSQNKVALSRTSTPLLHQYQMALSASPLASQARLPDAKGNALE
DTKAKNENVKEEPHSSEEESMSTEEIQTGMKSESLSPKNGTPSQTTNHKPSAKAETDRRM
VAARTEPLTPNPSSKKQRLNKRGSETSSDSDSDSDRSSCSSRSSSSSSSSSSSCSRSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEAQKRAEGTPHMKAYDEESVAS
LSTTQDETQDSFQLNNGTQNSTYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPS
ARRSYDNNTVASFYTTKLLDSPGAAADYSEPSAPTPPSAGVKEERDQSPQMSKVKKHVRE
KEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGTLGQQQYLARLRELQNASETSLVNFPK
SLPESGTSSQLTASANGVIADSQPVVKKRRGRRKNVEGVDILFINRNKQPNHVSPGINTS
QIAPGINPTFTFAQSQSLLDEESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYVED
LGAFIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKD
LCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEIAKAA
TAAAATTAANISVNPLLANGLLPGVDLSTLQALQQNLQNLQSLQVTAGLMGMPAGLTTGG
EAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSTESVSEDKKGSDLKEADSKKERTESQNK
DNCGENSVSSSPSTSSAAAAANPLALNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFDV
QNSENNDTGSVKPTEEKEENSRIRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTSS
SSEDSDSSDED
NT seq
8676 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaacctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgtacaacctgggcctgtttcactggttgatgaactgaat
ttgggtgcagaatttgagcctttgcacatagacacattgaatcatgtgcaagatacccaa
gctcaacagaagatgagtgaatttgagcagctaaatcagtatgattcattgaaacttcac
caagtaaatcagtcattcaacagcccagctgacagtgtcttatcacctcactctcaattc
agttgctcaccaatccatccaccaaaccaatccaatgggatgtttcctgatgttgcagat
ggtagtcctatgtggggtcatcaaactgctacagctattccaaatcaaaatgggtcccct
tttcacccaggacattctcagactatgcagcaaaataaaagctttgtagcacaccatgat
tttgccttatttcaggccaatgaacagcaacatcagtgtgcctcactacgttcgcagcaa
agcagaaacaatgctaactcagggcaagacactctgagtcagccaaaaaacttcatggag
gttaatgtgtctgcttcacacagagtcaatgttacccacccacctccagttgctaatcca
tcagcttcacaacagcctcttcctgttaaaccattttctcaaactgcaactgcttcgata
catttctgtggaaatcaagagggaaattttgatggacagtccccaaccatgacttcttgt
ccagtcagtaatacccagcagttttcttattcctactctaacaaccacatttcttctacc
agccttctgcagtcttctacaactctttctagtagccaacaaacgcatcctttatctgat
tttactggaagtgatgcctttacacctcgagcagggaccaaacaagaaaccaccgagcac
ttgttgaatcctaacacacccttaaattcaaatagtttccagatgttgcattcagcgcat
cctcagggcaacttcagtagttcaaaactctctcctgtgaacattagttttccagcttct
gctggttcttctcaaataagccatttcagtgatcctatagaaagcaatggtttttcatct
ttggatgagagtttacttcatcaagttgaatctcaaggtgaaccatttacagggcttgat
ccagaggacctcctccaggaagatctccttccccagtttgatgattcagcctttgttcag
gacagttcaagccacgtattagaacatgacctagaacatcacattactccacagcaagta
acgcagtcatctgatattgttcggacgcagtcacaacaaagtcggatgcatccttggcat
tcttcagtgtctaatcagcatgttcaaggcagaaatcgtgtaaccttgcaaggacagcct
ccttcctcgaagaagacagatggttcgggagcttatactaaattgcagaatacccaggtg
agggcaatgtctgaaaagaaacagaagaaaaaagtggagtctgaaagtaagcaagagaag
gctaatcgcataatatcagaggcaattgcaaaagcaaaagagagaggggagagaaatatt
ccacgagtaatgagtcctgagaatttccccagtgtttcagctgaaggaaaagaggaaaag
aaaggtagaaaaattaaatctaaaccaaaggacaaggagagcaaaaaacctagaactggc
tcctcatccaaaattaaagagaaaacaaaaataggcaaacttattatcacattgggtaaa
aaacaaaagagaaaaaatgagtcttcagatgaattgtctgatgctaagcagactccacaa
aggtcattcaaagatgaggacttgcagaaaagaagatcaaatcgtcaagttaaaaggaaa
aagtatgctgaagaaggagaaggaaaacagtcagaggaagaggctaaagtttctgtgaaa
atcaaaaagaattctgctcctttgcctgctgaacaacccctacaattatttgtggagaat
ccaagtgaagaggatgcagcaattgtagacaaaattttatcttcaaggatagtaaagaaa
gaagtatcagctggagtgactgtggaagcagaagaattctttgtgaaatacaagaattac
tcttacctccactgtgaatgggccacagaacaacagcttttgaaggataaaagaatccag
caaaaaatcaaacggttcaagctgaggcaagcacaaagagctcacttttttgcagatatg
gaggaagaaccttttaatcctgattatgttgaagtagaccgggtattagaagtctccttt
tgtgaagataaggatactggggagcctgttgtttactatttagtaaagtggtgttcatta
ccatatgaagatagcacatgggagctgaaagaagatgtcgatcaagcaaaaatagaagag
tttgaacaattgcaagcttccaggcctgactcaaggcgattggaccgacctcctccaaat
tcttggaagaagatagaacattctagggaatataaaaatggcaaccagctcagggaatac
caactggaaggactcaattggctcctattcaactggtacaataggagaaactgcatttta
gcagatgaaatgggccttggcaaaactattcagtcaattacattcctctatgaaatcctc
ctgactggtatacgtgggcctttcttaatcatagctccactttccactataactaattgg
gaaagagaatttcgtacgtggactgatattaatgttgtggtgtatcatgggagcatggtt
agccggcagatgatacagcagtacgaaatgtacttcagagactcacaggggcgtatcatt
cgaggtacatacaggttccaagccattatcaccactttcgaaatgattcttggtggctgt
ccagaactcaatgcaattgaatggcgttgtgttattattgatgaagcacacaggctaaag
aataaaaattgcaaactcttggaaggactaaaactcatgaatcttgagcacaaagtgctg
ctgacaggcacaccactgcagaacacagttgaagaattatttagccttcttcattttctt
gaacctttgcgttttcctgctgaatctacattcatgcaggaatttggggatcttaaaaca
gaggagcaggtgcaaaaactacaagctattctgaaaccaatgatgctgagacgtttaaaa
gaagatgtagagaaaaagttggcacccaaggaagaaactataattgaagtagaactaact
aatatccagaagaaatattatcgtgcaattttggagaagaattttgcttttttgtctaaa
ggagcaggtcaagctaacgtacctaatctagttaacactatgatggaactcagaaagtgt
tgcaatcatccttatctcatcaaaggtgctgaagagaaaatccttggggagtttagagag
acacatagtccaactgcaccagatttccacctacaagcaatgatccactctgctggtaaa
ttggttctcattgataaacttcttccaaaaatgaaagcaggaggccacaaggtgcttatc
ttctctcagatggttcgctgccttgacattttggaggactatcttatacataagagatac
ttatatgaacgaatagatggaagagtaagagggaatctgaggcaagctgctatcgatcga
tttagcaaaccagactctgatcggttcgtgttccttctgtgtaccagagctggtggactg
ggcattaatttgactgcagctgatacatgtataatttttgattctgactggaatcctcag
aatgatctgcaggcccaagcacgttgccacaggattggtcagaacaaagcggtgaaagtc
tacagattgataactcgaaactcatatgagagggagatgtttgacagagcaagtctgaag
ttgggtttggataaagctgtcctgcagagcatgagtggaagagaaaatagcgttggtggt
attcagcaactttccaaaaaagaaatcgaagatctgctacgaagaggtgcctatggtgct
attatggatgaagaagatgagggctctaaattctgtgaagaagatattgaccaaattttg
caacgtcgtacaaaaactataacaattgaatcggaaggaaggggttcaacatttgctaaa
gctagttttgttgcatctgggaataggactgacatatccttagatgatcccaacttctgg
cagaaatgggccaaaaaagcagaaatagatatagaagccatcagtggtagaaacagcctg
gttattgatactccaagaattaggaagcaaacaaggccttttagtgctacaaaagatgag
ctggctgaattatcagaaccagagagcgaaggagatgaaaaaccaaaactccgcagacct
tgtgatcgctccagtggatatggaagaacagagtgctttcgggtggaaaagaacttactg
gtctatgggtggggtcgatggagagagattttgtcacatgggcgcttcaagagacagcta
aacgaacaagatgtggagataatttgtcgagccctcttagcatattgccttgttcactac
agaggagatgaaaaaataaaaagttttatatgggatcttatcactccaacagaggatggg
caaacacgtgagctacagaatcacttaggtttgtcagcccctgtacccagaggtcgaaaa
ggaaagaaagtaaagactcaggccagcacctttgatatacataaagcagaatggcttcga
aaatataatcctgagcatctacttcaagatgaaggatataaaaagcacataaagcaccac
tgcaacaaggtcttgctacgagtaaggatgctgtattatttaaaacaagaagtaattgga
aatgatttccaaaaagtgtttgatggagctgatgccagtgaaattgatatttgggtacct
gagccagaccactctgaagtcccagcagaatggtgggatgcagatgcagataaatccctc
ttaattggagtttttaagcacggttatgagaagtacaacactatcagagcagacccagcc
ctgtgcttcttggaaagggtgggcaaaccagatgaaaaagcagttgctgctgaacagaga
gcaaatgattacattgacggggatgtagaagatccagaatataaaccagccccagcaatg
tttaaagatgatatggaggatgatgtttcatcaccaggggatcttgtaatagcagatgga
gatggtcagatgatggaaggagacaaaatttattggcccactcagtctgccctaacaaca
cgtctgcgccgcctaataacagcctatcaacgtactaataaaaataggcagacacagcag
atccagccagcgttcccagttcaggccagcatgatgcagccttcatatgaagaagccgct
ctaaatccaaaaatggctgccaagattgaaaggcaacaaagatggacaagaagagaagaa
gctgatttttacagagttgtgtctacatttggagtggtatttgatcctgacaggggccga
ttcgattggacaaaattcagagctatggctaggctacataagaaaactgatgagagtttg
gagaagtacttatatgcatttatgtctatgtgcagaagagtctgtcgtctcccctcaaaa
gaagaactggtagatccaggcatttttatccagcccattacagaggaacgtgcttcacga
accttatatcgcattgaacttctgaggaaagtacgagaacaggcgctccgacatccacag
ttgtttgaacgattaaaactttgccagccaaatccagatttaccagtctggtgggagtgt
gggactcatgacagggatttacttattggagctgctaagcatggggttagcaggacagac
tatcacattcttcgtgatcctgaactctcatttatgtctgcccagaggaactacagtcag
aacaaagtggcattatcaaggacttctactccacttttgcatcagtatcagatggcattg
tcagcttctcctcttgcatctcaggcaagattaccagatgctaaagggaatgctcttgag
gatacaaaagctaaaaatgaaaacgtgaaagaagaacctcactcttctgaagaggaatct
atgtctacagaggagatacagacaggaatgaaatctgaatctttgagcccaaagaatggc
acaccatcacagactacaaaccataaacctagtgcgaaggctgaaactgataggcgcatg
gttgcagcaaggacagagcccctaactccaaacccttcttccaaaaaacagagactcaac
aaaagaggatcagaaactagttctgattcagactctgattcagaccgatcatcctgttct
tccaggtcatcttcatcctcctcttcctcttcttcatcttgttcacgctctcgatcagga
tccagctcttcatcatcgtcatcttgttcctcagcatcatcgtcatcgtcgtcatcctct
tcttcctcttcttcatcctcatcatcttcctctgaagagagtgacagtgatgaagaagca
caaaagagagcagaaggaacccctcacatgaaagcatatgatgaagagagtgtagcgtct
ctgagcactacacaagatgagacccaggacagtttccagttgaacaatgggacacaaaat
tccacttatctcttgcaaggtggatacatgttggctgcctcctattggccaaaggatcga
gttatgattaatcggctagacagtatttgtcaaacagtattgaaaggtaaatggccttca
gcaagaagaagttatgacaacaatacggtggcatctttctatacaaccaaacttctggac
agcccgggtgcagctgcggactacagtgaacccagtgcaccaacacccccaagtgcaggt
gttaaagaagagcgtgatcagtcaccacagatgtcaaaggtgaagaagcatgtacgagaa
aaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaagcag
gggctttctcagaaaaggccatttgagagcgaagaaggcacattaggacagcagcaatac
ctggctcggcttcgtgaactccagaatgcatcagagaccagccttgtcaatttccccaaa
tccttgccagaatcaggtacttccagtcagttaacagctagtgctaatggcgtaatagct
gacagccagcctgtagtgaaaaagaggagaggaaggaggaagaatgtggagggcgttgat
atcctctttataaacagaaataaacagcctaatcacgttagtccaggaattaacacctct
caaattgctccaggaataaacccaacatttacatttgcccagtcccaaagtttacttgat
gaagaaagtccagttcccgttattaacctgaaggatgggacaaggcttgcaggagatgat
gcaccaaaaaggaaggatttagaaaaatggctcaaggaacatcctggctatgttgaagat
ttaggagcttttattcctcgaatgcagcttcatgatgggaggcccaaacaaaagagacat
cgttgtcgaaaccctaataaattggatgttaacagtctcactggtgaagaacgtgttcag
ctgatcaatagaagaaatgctagaaaggtgggaggtgcttttgccccaccactgaaggat
ttatgcagattcttaaaagaaaatccagaatatggagtagctcctgagtggggagaggtt
gtaaaacaatctggatttcttccagaaggtatgttcgatcgtattctcactgggcctgta
gtgcgagaagaagtaagcaggaggggaaggcggcctaaaagcgagattgccaaggcagca
acagcagcagcagctacaacagcagcaaatatatctgtcaaccctttgctagccaatgga
ttacttccaggagtggatctatctactcttcaggccttgcaacaaaacctgcaaaattta
caatcactgcaagtaactgcaggattaatgggaatgcctgctggcctaactactggagga
gaagctaagaatatggctgctatgttccccatgctactgtcagggatggctggattacca
aacttgctgggtatgggaggacttctaactaagtctacagaatctgtgtcagaggataaa
aagggaagtgacttaaaggaggcagatagcaagaaagaaaggacagaaagccaaaacaaa
gataattgtggagaaaactctgtatcaagctctccttcaacatcctctgctgctgcagct
gccaacccattagctcttaaccccttacttttgtccaatatactttatccagggatgctt
ctcactccaggccttaatctccatatcccagctttgtcccaatccaatatttttgatgta
cagaacagtgaaaacaatgacacaggctcagtcaagcctacagaggaaaaggaggaaaat
tctaggattagagatcaggaagacaaagggggaacagagccaagctctcataatgaaaac
agcacagatgagggttcagagaaagcagatgcttcatctggatctgatagtacatcgtct
tcatctgaggattccgattctagtgatgaagactga
DBGET
integrated database retrieval system
