Alligator mississippiensis (American alligator): 102576168
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Entry
102576168 CDS
T03087
Symbol
SLX4
Name
(RefSeq) SLX4 structure-specific endonuclease subunit
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
102576168 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amj04121
]
102576168 (SLX4)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102576168 (SLX4)
Ubiquitin system [BR:
amj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
102576168 (SLX4)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102576168 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
102576168
NCBI-ProteinID:
XP_006275878
LinkDB
All DBs
Position
Un
AA seq
1631 aa
AA seq
DB search
MLTALAAFHRCLDETEKSQVPSSSISRVPECPICGKQFQIPKSRASHLKHCAVKMQVPPQ
LLLQAVKLQASSLSERLPPAPSTQVSRSKRKDGSKEQAKKKPKMSKAETADEDVLVAMAM
SRSLQEHEKQKQAESVTGGKLESALPIKWKPGSKKKSRKKLPLAPPPLLLQDPETSCKQI
QDRVAMLLTEEVEFSSTPPLPFSRILEDEPEKTEWLLPLPKDKRCLLWEFSALTGPCDPE
TFYTAGLTPPILPCKPVQSQKSETVFSLMGSDQPQLIQQPPVISHLAPAELGNKLSDEPQ
TGPGEDSPSPSCKDVQILQDLIELAGEGLTLTQWNHEIHLSHTEEQSRKESAPTDIPLSG
FVPLYTGKRCQRSSHHRPLLQSLAFDFSGMVNNPHLSDIQFQVDSGEVLYAHMFVLYARC
PRAVEMAHNEGFLVEEDGNLQIRRVLLSEVTAEATYAFLRYLYSADSNIRPHVLSDVRIL
AARFSVSELIAICGSSPGENQEPSGVDSGEELFSVGDDEDCENRAENFQELLKSMWIDED
EEEIALLKPEGEEEEDHEKVDEQELEEIYEFAATQRKMAQDKPQEEECTEKSIYSESEKA
QDMNQQVDDKGGKVFESSSTCSKIKEWKGSINLGRSRCDLPTQEKKIQGPDRCEGMNVTQ
ITTVHCQDESYKCSDNAMSCSAFFGERRTTRTPRVSRSYQASQNEEEEDPWEKLFPSHQH
NVALDVSYEHMFSATQGNYCDPASLNEDIKDPGETNSEKCVEINNSPVCHQPQKGLESGK
SSFCHSPLIKPCTPLFPAIGSSPLSAKLNQTLSRVYTGIHPISTPIRDLSRDDVPFYKAS
EQSVASRHENMKRRVFPDRSPCIDLNKKKSLSPSSSQILKTQDATSHMNKEPDIIVLSDS
DEEIELKQTKEESDSGSSLRETEISRKLDYICKKVEQDPKVPKSEPVSVVDKEVHQRLSQ
VSLGIQNEVHSNAVAEVLPETHVNSWAGTCVDSKLNLNLSCGKEYSCEESSSMDASWLVP
GTPLLSESRNCSTQTQVSSMRNLNHQGSTHKTEVLVVDNNSHKPSRTIISSPEPTSGGLP
VTLSEKPFHLDNSVSKRNSSGSQLGQCSKDFLPISPVPTSSLSPNCASVKEKSSESPSLA
RQVPPCHKQSLANKTDISVVEVEDSEEEKDATPFSPSSNFLLGDDPPVPVDDAFWDVEYL
SPIRETSKEPEKSDCANNSTTNSKSDPKEEQWKTPTRLLEVRGSTPLRGSPFDTRKLLSC
DKKSPVETRPSVGSRLSFLDSKVWDSWNGDEDDLPEVIPLTQRLSAAAAAQNTELLKTPQ
PVCPKKNLPPKVPITPMPEYSIMETPELKKELNRFGVRPLPKHQMVLKLKEIFQYTHQVM
ESDSEDEISSSQPRLWKAIAKHCSPSEADGTAVRTKSSKASSGASKQKMSILVPSLPVLG
SNDDNLMDPSTTSCAAAKMTAETKIHAGDASRQNEVTLSLAGSPVKGSLAISTDEQMLLA
SHESTSSSGDGTDHSFGSQSSSANEFETCALALEEDDNEGVPASQTATQDADKQEAVRRY
IHSNPALYRRILFYEPLELAELQAELKQNGIKIGLGKLLDFLDAHCITFTTAGARKEKQQ
HRGKKKRGKRY
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgttaacagcccttgctgccttccacaggtgtctagatgagaccgagaaatcacaggtg
ccctcctccagtatctcacgtgtccctgagtgtcccatctgtgggaagcaattccagata
cccaaaagtcgagccagtcacttgaaacactgtgctgtcaagatgcaggtccctccccag
ctgcttctccaggcagtgaagttgcaagcttcatccctcagtgagaggcttcctccagca
cccagcactcaagtcagcaggtcaaagagaaaagatggctccaaagagcaggcaaaaaaa
aagccaaagatgtccaaggcagaaactgcggatgaggatgtgctggttgccatggcaatg
tcccgatctctgcaggagcatgaaaagcagaaacaagcagaatctgtaacaggtggtaaa
ctggagagtgctctgccaatcaagtggaagccaggatcaaagaaaaaaagtcgtaagaag
ctcccccttgcacctccgccattgttacttcaagatccagaaacatcctgtaaacagatt
caagaccgggtggccatgctgctcactgaggaggtagagttctccagtacccctccactc
cccttcagcaggattctggaggatgagccagagaaaacagagtggcttctgccattgcct
aaagataagcgctgccttttgtgggagtttagtgctttgactggaccctgtgaccctgaa
accttctacacagcaggattaacccctccaattttaccttgtaaacctgtgcagagtcag
aagtcagagactgttttttcattgatgggatctgaccaaccacagctaatccaacaaccg
cctgtcatcagtcatcttgctcctgcagaacttggaaacaagctttctgatgaacctcaa
actggcccgggtgaggacagccccagccccagctgcaaggatgttcagattctgcaggac
ttgattgagctggctggggaaggactcactctcacccagtggaaccatgaaattcacctc
tcccatacagaggagcaatcaaggaaagaatcagcgcccacagatattccactcagtggc
tttgtccctctatacacaggaaagaggtgccagagaagcagccatcacagacctttgctc
cagtcactggcttttgattttagtggaatggtcaacaatccccatctaagtgacatccag
ttccaggtcgactctggggaagttctttatgcccatatgtttgtgctatatgcacggtgc
ccacgggcagtggaaatggctcacaacgaaggttttttagtggaagaagatggaaatttg
cagatccgccgagtgctactgagtgaagtgacagcagaggcaacgtatgcatttctacgg
tacctctattctgctgattctaatatccgtccccatgtgctctctgatgtgaggattctt
gcagccaggtttagtgtaagtgaactgattgctatatgcggaagcagccctggagagaac
caggaaccatctggggtggattcaggagaggagcttttctctgtgggggatgatgaggat
tgtgagaatagagctgagaacttccaggagctcttgaagtcaatgtggatagatgaagat
gaggaagaaatagctttgctgaaaccagaaggtgaagaggaggaagaccatgagaaagtg
gatgaacaggaacttgaggaaatctatgagtttgctgctacacagcgaaaaatggctcaa
gacaagccacaggaggaagaatgcacagagaagagcatttacagtgaatcagagaaggcc
caagacatgaatcaacaggtggatgacaaaggggggaaggtatttgaatcttcctcaaca
tgtagcaagattaaagaatggaagggaagtattaatctgggaagatctaggtgtgattta
cctacgcaagaaaagaaaatccaaggtccagataggtgtgagggcatgaatgttacacaa
atcactacagtgcactgccaggatgagtcttataagtgcagtgataatgccatgtcctgc
agtgcattctttggtgaaagacgaaccactagaacacccagagtttccagatcatatcag
gcttcacaaaatgaagaggaggaagatccctgggaaaaactgttccctagtcatcaacac
aatgtagcccttgatgtaagttatgagcacatgttttctgcaacccagggaaactactgt
gatcctgcctcattgaatgaagatataaaagaccctggagagaccaacagtgagaaatgt
gttgaaattaataactcaccagtttgccatcagccacagaaaggccttgagtcgggcaag
agcagtttctgtcacagtcctcttattaagccatgcacacctctttttcctgctattggt
tcatcccctttgtctgcaaaattaaatcagactttatccagagtatatacaggcattcat
cctatatcaacaccaataagagatctctctcgtgatgatgtgcccttctacaaagccagt
gagcagagtgttgcttcaagacacgagaacatgaagagaagagtttttccagacagatct
ccctgcattgacttaaacaagaaaaaatctctctcaccatcctcatcacagattctcaaa
actcaggatgccacatctcacatgaacaaagaacctgatattattgttttgtcagattct
gatgaagaaattgaattaaaacaaacaaaagaagaatcagattctggatcttccttgagg
gaaacagaaatttctaggaaattggattatatctgtaaaaaagtagagcaagatcccaag
gtgccaaaatctgaacctgtatcagttgttgacaaggaagtacatcagaggctgtctcaa
gtctcacttggaattcagaatgaggtgcatagtaatgctgttgcagaggtgttgccagag
acgcatgtgaacagctgggcaggtacctgtgttgacagcaaactgaatctgaatctgagc
tgtgggaaagagtacagttgtgaggagagttctagcatggatgcatcatggctagtgcca
ggcacacctcttttgagcgaaagcagaaactgctcaacacagacccaagtttcaagcatg
agaaatttgaatcatcagggatccacgcacaaaactgaagttttagtggtagataataat
agccataagccttctaggaccatcataagcagtcctgaaccaacttcaggtgggttgcca
gtgactttgtcagaaaaacctttccatctggacaactcagtcagcaaaaggaactcttcc
ggcagccagttgggtcagtgttcaaaagactttctgcccatttctcctgtgcctacaagt
tcactctcccctaactgtgctagtgtaaaagaaaagtcttcagaaagcccttctttagcc
agacaagtgcctccatgccataagcagtctttggcaaataaaacagacattagtgtggtt
gaggtagaggacagtgaggaagaaaaagatgcaactccattttcaccaagtagcaacttc
ttgctgggtgatgatcccccagtcccagttgatgatgccttctgggatgttgaatatctg
tcaccaatcagagagaccagcaaagagcctgagaagtctgattgtgcaaataacagcaca
accaacagtaaaagtgaccctaaagaggaacagtggaaaaccccaacaagactcctggaa
gtcagaggtagtacccctcttagagggagtccttttgacacacgaaaacttttgtcctgt
gacaaaaagagtcctgttgagacacggccttcagtgggtagtaggttaagctttttggat
tccaaagtctgggacagttggaatggagacgaagatgatctcccagaggtaattcctctc
acacagaggctgtcagctgcagctgctgcccagaacacagagctactaaagactcctcag
cctgtctgcccaaagaagaacctgcctcccaaggttccaataacaccaatgccagaatac
tccatcatggagacgccagagcttaagaaggagttgaacagatttggagtccgtcctctc
ccaaaacatcagatggtgttaaagctgaaggagatattccagtacactcaccaggtcatg
gagtccgattcagaggatgaaatctcatcctcccagccccgcttgtggaaagcaattgcc
aagcattgcagcccatccgaggcagatgggactgcagtgagaacaaagagttccaaagcc
tcaagcggagcgagcaagcagaagatgagtattttggtcccttccttgcccgttctgggg
agcaatgatgacaacttaatggacccctctacaacaagttgtgcagcagctaagatgact
gctgaaaccaaaatccatgcaggagatgccagcaggcaaaatgaagtaactctgtctctt
gctggatctccagttaaaggttctctggcaatcagcactgatgagcagatgctcttagca
tcacatgaatctacatcgtcttcgggggatggaacggaccattcctttgggtcacagagt
tcgtctgccaatgaatttgagacctgtgcccttgcattggaagaagatgataatgagggg
gtcccagcatctcagactgccactcaggatgcagataaacaggaggcagtgagacgctac
atccattcaaacccagctctctatcggaggatactcttttatgagcccttggagctggct
gaactgcaagctgagttgaagcagaatggcatcaagattgggctgggaaagctcctggat
tttttagatgctcactgcattacctttaccacagctggggcacggaaagagaagcagcaa
cataggggtaagaaaaagagaggcaaacgatattaa
DBGET
integrated database retrieval system
