Alligator mississippiensis (American alligator): 102576638
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Entry
102576638 CDS
T03087
Symbol
COL2A1
Name
(RefSeq) collagen type II alpha 1 chain
KO
K19719
collagen type II alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102576638 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102576638 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102576638 (COL2A1)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102576638 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
102576638
NCBI-ProteinID:
XP_006273402
LinkDB
All DBs
Position
Un
AA seq
1421 aa
AA seq
DB search
MFSLTNSRTLVILTVTHVLLLAVVRCQEEDIRQPGPKGQKGEPGDIKDVVGPRGPPGPQG
PSGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGG
FDEKAGGAQMGVMQGPMGPMGPRGPPGPPGSPGPQGFQGNPGEPGESGASGPMGPRGPPG
PPGKPGDDGESGKPGKSGERGVPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPG
AKGETGSAGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPSGGPG
FPGAPGSKGEAGPTGARGPEGGQGPRGESGTPGSPGPSGAPGNPGTDGIPGAKGSAGAPG
IAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEHGPKGETGPAGPQGAPGPAG
EEGKRGARGEPGAAGPHGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGANG
DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPG
PKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPAGPAGERGEQGAPGPSGFQG
LPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQGPRGLPGTPG
TDGPKGATGPGGPQGAQGPPGLQGMPGERGAAGIAGPKGDRGDIGEKGPEGAPGKDGSRG
LTGPIGPPGPSGSNGEKGELGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPG
AKGEQGESGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGGRGAQGPPGATGFPGAAGRVG
PPGPNGNPGPPGPPGASGKDGPKGARGDAGPSGRAGDPGLQGPAGPPGEKGESGDDGAPG
PDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPGPVGPPG
LTGPPGETGREGSPGSDGPPGRDGAAGVKGDRGETGAVGGPGAPGAPGAPGPVGPTGKQG
DRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPG
PSGDQGATGPGGPAGPRGPAGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPG
PPGPPGPPGTGIDMSAFAGLGQAEKGPDPIRYMRADQASTGLRQHDAEVDATLKALNNQI
ESIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMDTGETCVYP
NPASIPQKNWWTSKTKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTFLRLLSTEGS
QNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALEDGCTKHTGKWG
KTVIEYRSQKTSRLPIVDIAPMDIGGANQEFGVDIGPVCFL
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttgacgaattcaaggactcttgtcattctcacggtcacccacgtcctttta
ttagcagttgtcagatgccaggaggaggatatccggcaacctggccccaagggacaaaaa
ggtgaacccggagatattaaagatgtggtaggaccacgagggccccctggaccacaggga
ccttcaggcgaacaaggacaacgaggagatcgcggcgagaagggagaaaagggtgctcct
ggcccccggggtagagatggcgaacctggtacacctggaaaccctggaccccctggacct
ccaggtcccccaggaccccctggccttggtggaaactttgctgctcagatggccggaggt
tttgacgagaaggctggcggtgctcagatgggagtgatgcagggcccgatgggacccatg
ggcccgcggggaccccctggacctcccggatcacctggcccgcaaggctttcaaggcaac
cccggggaacctggagaatctggcgcttctggcccaatgggtccccgaggaccacccgga
ccccctgggaaacccggtgatgacggtgaatcaggcaagcctggcaaatctggagagcgt
ggagtccccggcccccagggtgctcgaggcttccccgggacccccggcctgcctggagtc
aaagggcacaggggctaccctggcttggatggagccaagggagaagcaggggcccccggt
gccaagggtgaaacaggatcagctggtgagaacggctcccccggtcccatgggtccccgc
ggcctgcccggcgagagaggacgtcccggcccctccggcgctgctggtgctcgtggcaac
gacggcctccccggccccgccggcccgcctggacctgtcggcccctctggaggtccaggt
ttcccaggcgcccccggctctaagggtgaagctgggcccaccggtgctcgtggtcccgag
ggtggccagggcccccggggagaatccggcacccccggctctcctggaccttctggagcc
cccgggaaccccgggaccgacggcatccccggagcgaaaggatcggctggcgctcccggg
atcgctggtgctcctggcttccctggaccccgcgggcctcccgggcctcaaggagctaca
ggacctctgggtcccaaaggtcagacgggtgaacctggcatcgcaggcttcaagggcgaa
cacggccccaaaggtgaaacgggccccgcgggaccccagggagctcccggcccagctggc
gaggaaggcaagagaggtgcccgcggtgaaccgggtgctgctggaccccacgggccacct
ggagagagaggtgcccctggaaaccgtggtttccccggtcaggatggtctcgctggaccc
aagggtgccccaggcgagcgtggccccgccggcctggccggacccaagggagctaatggt
gaccccggccgtcccggagagcctggcctgcccggcgccaggggtctcactggccgtcct
ggtgatgctggtcctcaaggcaaagttggccccacgggtgcccctggcgaggacggccgg
cctggcccccctggcccacagggtgcccgtggccagcctggcgtgatgggcttccctggc
cccaaaggcgctaatggcgaggctggcaaagctggcgagaaggggctgcctggtgccccc
ggcctgaggggtctgcctggaaaggacggtgagacaggagcctctggtccccctggacct
gccgggcctgcaggagagagaggcgagcaaggtgctcccgggccctccggcttccaggga
ctgcccggccccccaggccctcccggtgaaggtggcaagcccggtgatcagggtgtcccc
ggagaagctggtacccccggcctggtcggccccagaggtgaacgcggcttcccaggagaa
cggggctccccaggctctcaaggtctgcagggccctcgtgggctcccaggcacgcccggc
acggatgggcccaagggtgcaaccggtccaggtggcccacaaggtgcccagggcccacct
ggcctgcaggggatgcctggagagagaggagcagctggcatcgctggaccaaagggagac
aggggagacatcggtgagaaaggccctgaaggtgcccctggcaaagatggctcacgaggt
ctgacaggtcccatcggtccccccggcccttcaggttccaacggcgagaagggcgagttg
ggtcccccgggcccctccggtgctgcaggtgcccgcggtgccccgggtgagcgtggagag
cccggtgctcctggccctgctggattcgctggaccccctggtgccgatggccagcctggc
gcaaagggtgagcaaggagaatccggtcagaagggtgacgccggtgccccaggtccacag
ggtccatctggtgctcctggcccacagggtccaactggtgtgacaggtcctaaaggaggt
cgcggtgcccagggtccccctggagccactggatttcccggggctgccggacgagtcgga
ccacccggcccgaacggtaacccaggcccccctggcccgcctggcgcttctggcaaagat
ggtcccaagggtgcccgtggtgatgcaggtccatctggtcgtgctggtgaccctggtctc
caaggtcctgctggtccccccggcgagaagggcgagtccggtgatgacggtgctcctggt
cctgatggtccccccggtcctcaaggcttggcagggcagcgaggtattgtgggtcttcct
ggccagcgtggtgagagaggtttccccggcctgcctgggccttcgggtgagcccggtaaa
caaggagctcctggatcttccggtgaccgaggtccgcctggtcccgtgggtccccctggt
ctgaccggtcctcctggtgaaactggacgtgagggcagccctggatctgatggtccccca
ggccgagacggtgcagctggagtgaagggtgatcgtggtgaaacaggtgccgttggcggt
cctggtgctcctggcgctcctggtgctccaggtcccgtcggtccaactggcaaacaagga
gacagaggagaagcaggtgctcaaggtcctatgggcccctctggtcccgctggcgcccgg
ggcatgccgggtcctcaaggtcctcgcggtgacaagggtgaagccggagaggctggtgaa
agagggctgaagggtcatcgcggcttcaccggcctgcagggcctgcctggaccccctggt
ccttctggagaccaaggtgctactggccccggcggccctgctgggcccaggggtcctgcc
ggccctgtcggcccctctggcaaagatggctccaacggcatgcccggccccatcggtcct
cccggccctcgtgggcgtagcggtgaacccggtcctgctggtcctcctggaaaccctggc
ccccctggccctcctggccccccgggcaccggtatcgacatgtcagccttcgccggcctg
ggccaggccgagaagggccccgaccccatccggtacatgcgcgcggaccaggcctcgact
ggtctgcggcagcacgacgctgaggtggacgccacgctgaaggccctcaacaaccagatc
gagagcatccgcagccccgagggctccaagaagaacccagcccgcacctgccgcgacctc
aagctctgccaccctgactggaagagcggtgactactggatcgacccgaaccagggctgc
accttggatgccattaaagttttctgtaacatggacactggtgagacctgcgtctacccc
aaccctgccagcatcccccagaagaactggtggaccagcaagaccaaggagaagaaacac
atctggtttggagagaccatcaatgggggcttccacttcagctatggtgacgacaacctg
gctcccaacacggccaacatccagatgaccttcctgcggctcctgtccactgaaggctcc
cagaacatcacctaccactgcaagaacagcatcgcctacatggacgaggcctccggcaac
ctgaagaaagccatcctgatccagggctccaacgacgtcgagatccgggcagagggcaac
agcaggttcacgtacagtgccttggaggacggctgcacgaaacacaccggcaaatggggc
aagacagtcatcgaataccgatcacagaagacctcgcgcctgcccatcgttgacattgct
cctatggacattggtggagccaatcaggaatttggtgttgacatcggtccagtctgcttc
ttgtaa
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