Alligator mississippiensis (American alligator): 102576721
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Entry
102576721 CDS
T03087
Symbol
PDCD11
Name
(RefSeq) programmed cell death 11
KO
K14792
rRNA biogenesis protein RRP5
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amj03009
]
102576721 (PDCD11)
Ribosome biogenesis [BR:
amj03009
]
Eukaryotic type
90S particles
Other 90S particles
102576721 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
Spt6_S1
HAT_PRP39_N
Suf
OB_RRP5_4th
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
OB_RRP5
TPR_14
TPR_19
TPR_15
ARM_TT21
ARM_TT21_5th
TPR_12
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
102576721
NCBI-ProteinID:
XP_006273719
UniProt:
A0A151NVL6
LinkDB
All DBs
Position
Un
AA seq
1825 aa
AA seq
DB search
MASTEESFPRGGTQKKPKKGRAARQSVEQDNLFDTHHEEGSQKRKRNQEQPEKRKKLKTE
KKQAVKDHVRDFDLLTVETLSEGMLLLGCVKEANSFELVVSLPNGLTGFVQVTSICDSYT
QMLSEQVAKQELLEDLNSLSDLYPPGMLVRCAVTSLQKTIDGHQSVKLSINPKDVNKALN
TLALRSGMLLSGLVSSVEDHGYLIDVGLSGTKAFLPRQKAQDYLKSPNKGAELKIGQYLN
CLVEEVKNNGRIVRLSVGRSEVAAAIATEEQNWTLSNLLPGLVVKAQVQKVTPYGLTLSF
LSSFTGIVDFMHLDPKKAGSYSQNQTVKACILSVHPTSKAVRFTLRHAFFQPGGLLSQLS
SDRFGAVVAECTVKSFYKKAGAIFELEDGTQAFARLRHLSNTKNSLKPGTFKTGSKHKCR
IIDYSPMDEVAILSLKPQIIDALFLRYEDIPPGHVVEGKVLALKPLGMQVEVTDHIKGLV
PRLHLADMLLKQPEKKYSVGDKVKCRVLLSHPEEKKLILTLKKTLVGSKLPVLASYAAAK
PGLVTHGVVVCAREFGCIVKFYNDVKGLVPRNELGSEPIRFPEKVFYEGQVVKVTVLKCE
PEQEKLLLSFNLTSKSALEDEAEQAPKKKQEVTYETGQMVDVKVLKKRENGLEVSILSDN
VPAHLPMMHLSDHIVNCKLLWHWLQEEDVLPRVMCLSNKGGHVMLCRKPALISAVEEGQV
VRSFSEIQPGMQLTGFVKNIMPYGVFVEFPFGLAGLAPKAAMSDKFVTDTKDHFVVGQTV
VAKVTSIDEAKQRVLLCLKLSECSIEDPAAKSISLLSQCFEEMKEVRSIMRQRGHSKAAQ
NLCSLMFGQKLDLVVQEVKEDGSALFSGSSTAGLTVTATCHHLGDRNLVPGQKARALILH
VNALKSEVHVSLREELLNQKVKQLKENSQHSAVVQHVAEEFAIASLVETGQLTAVPVACH
FNDTFRFDSERLKVGQTILVTLKTVKTGEHGVLLAVQGPAKAVIRPRKESETFEETLALV
QHSLCIGDTVTGKVKSVKPTRITVAINDDLTGCIHASQILDKVPVGTFPTSKLRAGQKVT
ARVIGGRDVKTHRYLPITHPHFTKTIPELSLRPSELKGKGCTTLNTEGDELSERLKPYEV
GQTVTCFVTKYNVIKGWLEVEVTPDVRGRVPHLLLSLKPKVFKHPEKSFRSGQALSATVT
GMNPTNTNLCLSLTGIHSLEKGTITLGSIKKVTPHGLIVALPFGKIGNASLFHLSDSYME
QPWEHFRVGEIVRCCILSNEDGKIQVSLRQSRTNPKSNSEVEDAEITCIDDVKEGQLIRG
YVKFIKPSGVFFALSSSVVGRIRFQKVAPYFVSKQTVYEEHLPEGKLLTARVLSVSSQEN
HIELSFLPEDTGKLSVLPKSLGLPLHETKQEKKGEELKKLKAKRRRRDSESEQEAKPKKK
RMHPADKDDSGVEVYCWEEEEEEEEEENKSKSKQEVKHTEAPRLQVSTDFTWDEGLNALK
VPALSQPEESSDSEEDDDPQATLKKQTKKEKELEKQRVEKELCKIETALMDPTRQPQSAD
DFDRLVLSNPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWGALLN
LENMYGTEETLMKVFERAVQYNEPLKVFQHLADIYTNSEKHKQAEDLYHTMLKRFRQEKS
VWLKYATFLLKRGQAEATHRLLERALKGLPVKEHVDVISKFAQLEFQFGDPDHAKALFES
TLNSYPKRTDIWSIYIDMLIKHGSQKEVRDVFERVIHLSLAPKKMKFFFKRYLDYEKKYG
TADTIQAVKAAALGYVESKSSLAES
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggcatctactgaagaaagcttccctcgaggtggtacccagaagaaacccaaaaagggg
agagcagccaggcagtcagtagagcaggataacttatttgatacccaccatgaggaagga
tctcagaaaaggaagaggaaccaggagcagccagaaaagcggaaaaagctcaagacggag
aaaaaacaagctgttaaagaccatgtcagagattttgacctgctcacagttgagaccctg
agtgaagggatgctgttgcttggctgcgtgaaggaggccaacagcttcgagctagtggtc
agcttgcccaatggactcaccggcttcgtgcaagtgacaagtatctgtgactcctacacc
caaatgctgagtgagcaggtggccaagcaggagctcttggaggatttgaattcgctgtca
gacctgtacccaccagggatgctggtgagatgtgctgtgaccagtcttcagaagaccata
gatggacatcagagtgttaagctgtctattaaccccaaagatgtcaacaaggctctgaac
accttggctcttagatcaggcatgctgctttctggcttggtatccagtgtggaagatcat
ggctacctcatcgatgttggactcagtggcactaaagcattcctgcctcgtcagaaagcc
caggattacctcaaatcacccaacaaaggggctgaactgaaaatagggcagtacctgaac
tgtcttgttgaggaggtgaagaacaatgggaggattgtccgtctgtctgtgggtcggtct
gaggttgctgctgccattgcgactgaagaacagaactggacgctcagtaacttgctgccg
gggctggtggtgaaagcccaggttcagaaggtgactccatatggtctcacgctgagtttc
ctctcttccttcactgggatcgtggacttcatgcatctggaccccaaaaaagcggggagc
tattcacaaaaccaaactgtaaaagcctgcatcctgtctgtccaccctacatccaaggca
gtacggttcactttgcggcatgccttcttccagcccggtggcttgctaagccagctctcc
agtgatcgctttggggccgtggtggcagagtgtacagtgaagagtttctacaagaaggct
ggtgccatctttgaactggaggatggcactcaggcctttgcacggctgagacatctctca
aacaccaaaaactccttgaaacctgggacttttaagacaggaagcaaacacaaatgtcga
atcattgactacagccctatggatgaggtggccattttgtccctgaagcctcaaattatt
gatgctctgtttctgagatacgaggacatccctcctgggcacgtggtggagggcaaggtg
ttggctttgaaaccccttgggatgcaggtggaggtgactgatcacatcaagggactggtg
cctcgcctgcacctggcagacatgcttctgaagcagcctgagaagaagtacagcgtggga
gacaaagtcaagtgccgggtgttactgtcccatcctgaagagaagaagctcatcctcact
ctgaagaagactctcgtcggttccaaacttccagtccttgccagttatgcagctgcaaaa
cctggcttggtcacgcacggcgttgtggtatgcgccagggagttcggctgcatcgtgaag
ttctacaacgatgttaaaggcctggtccccaggaatgagctgggctcagagcccattcgt
ttcccggagaaagtcttctatgaaggccaggttgtcaaagtaacagtcctcaaatgtgag
cctgagcaggagaaactgctgctgtcattcaacctgactagcaaatcagctttggaggac
gaagcagagcaggctccaaagaaaaagcaggaagtgacctatgaaactggacagatggtg
gatgtgaaagtcttgaagaagagagagaatggtttggaggtctcaatcttgtcagacaat
gttcctgctcaccttcccatgatgcacctgtccgaccacattgttaactgcaaactcctg
tggcactggcttcaagaggaggacgttctcccccgggttatgtgcctaagcaacaaggga
gggcatgttatgctgtgcagaaagcctgcattgatttctgctgttgaggaggggcaggtg
gtgaggagcttttctgaaatccagccggggatgcagctgactggttttgtgaagaacatt
atgccctacggagtgtttgtggagtttccttttggcctggccggactggcacccaaagcg
gccatgagtgacaagtttgtgacagacaccaaggaccattttgtggtggggcagacagtg
gttgccaaagtgacaagcatcgacgaggcgaagcagcgggttctcctgtgcctgaaacta
tctgaatgtagcatagaagatcccgctgccaagagcatctctttgctgagccagtgcttt
gaggagatgaaggaggttaggagcatcatgagacaaagagggcattccaaggcagcccaa
aacctttgcagcttaatgttcgggcagaaactggacttggttgttcaggaagtgaaggag
gacggctcagcactctttagtggcagcagcactgctggattgactgtaacagccacttgc
catcacctgggagacaggaaccttgtccctggtcagaaagcaagagccttgattctgcat
gtaaatgcccttaaatccgaagttcatgtctcccttcgagaagagctgttaaaccaaaaa
gtcaagcagttgaaggaaaattcccagcactcagctgtcgtgcagcatgttgcagaagag
tttgccattgcctccttggtggaaacgggtcagctgactgccgtccctgtggcctgtcac
ttcaatgacacgttccgttttgactcggagaggctgaaggtggggcaaaccatcttggtg
accttaaaaacagtgaagacgggtgagcacggagtcctgctagcagtacaaggcccagca
aaggcagttataagaccccggaaagagtccgagacatttgaggagaccttggctttagtg
cagcactcgctgtgcataggggatacagtcactgggaaggtgaagtctgtcaagcccacc
cgcatcacagttgccatcaatgacgacctgacaggctgtatccacgcatcgcagatcttg
gacaaagttcctgtcggcacctttccaacatccaagctgagagctgggcagaaggtgact
gcgcgggtcattggaggcagagatgtgaagacgcacaggtacttgcccatcacccatcca
cacttcacaaagaccattccagaactcagccttcggccaagtgagctgaaggggaaaggc
tgcacaaccctgaacacggaaggggatgaactgagcgagaggctcaagccttacgaagtc
gggcagacggtgacctgcttcgtcacgaagtacaacgtcatcaagggctggctggaggta
gaggtcaccccggatgttcgaggaagggttccacatctgctgctttccctcaaacccaag
gtcttcaagcatccagagaagagcttcaggagcggacaggctttgtctgctacagtgact
ggcatgaatcccaccaacaccaacctctgtttgtcccttacgggaatccactccctagag
aagggaaccatcactttgggctccataaaaaaggtgaccccgcacggcttaattgtggcg
cttccctttggcaagattggcaatgctagcctcttccacctgagcgattcgtacatggag
cagccctgggagcatttccgcgtgggtgagatcgtcaggtgttgcatcctttccaatgaa
gatggcaaaatccaagtctccctccggcagtccagaacaaatcctaagagcaatagcgaa
gtggaagatgctgaaattacttgcatcgatgatgtgaaggaaggccagttgatccgaggc
tacgtcaaattcatcaagccttcaggcgtgttttttgctttgtccagctctgttgtgggc
cgaatccggttccagaaggttgccccctactttgtatcgaagcaaactgtgtatgaggag
cacctgccagaagggaagctgctcacagccagggtcctcagtgtgagtagccaggagaac
cacatagagctctccttcctgcctgaggacactgggaagttgagtgtcttgcccaagtcc
ctgggcctgcccctccatgaaacaaagcaggagaagaagggagaggagcttaagaagctc
aaggcgaaacggagaagacgagactctgaaagcgagcaggaggcaaaaccaaagaaaaag
agaatgcatcctgctgacaaagatgacagtggggttgaagtctattgctgggaggaagag
gaagaagaggaggaagaggagaataaaagcaaatccaagcaagaggtaaagcacacagag
gctccgagactgcaggtttctactgacttcacctgggacgagggactaaatgcactcaag
gtgccagcattgagtcagccagaggagagctcggacagcgaggaggacgacgatccacag
gccacgctgaagaagcaaaccaagaaggagaaagagctggaaaaacagagagtggaaaag
gagctctgcaaaatagaaactgccttgatggaccccacccggcagccccagagtgcggat
gactttgaccgcctggtgctgagcaaccccaacagctccatcctgtggctgcagtatatg
gctttccatctccaggccactgagatcgagaaggcccgcgctgtggcggaaagggcgctc
aaaaccatctccttcagggaggagcaggagaaactgaatgtgtggggagctctgctgaac
ctggagaacatgtatggtactgaggagacgctgatgaaggtctttgagagagctgttcag
tacaacgagcccctgaaggtcttccagcatttggcagacatctacaccaactctgagaag
cacaagcaagccgaagacctgtaccacacgatgctgaagcgcttccgtcaggagaaatcg
gtgtggctgaagtacgccaccttcctcctgaaacgaggccaggccgaggccacacacagg
ctcctggaacgtgccctcaaggggctgccagtcaaagaacatgtggatgtgatttccaag
tttgctcaacttgagttccagtttggggacccagaccatgccaaggctctttttgagagc
acactcaacagttatcccaaacgcactgacatctggtccatctacatagacatgttgatc
aaacatggcagccagaaggaagtacgggatgtttttgagcgggtcattcacctaagcctg
gcaccaaagaagatgaagtttttctttaaacgctacctggattacgagaagaaatatggc
acagcggacactatccaggctgtgaaagccgcagcgctgggatacgtggagtccaagagc
tcccttgctgagagttaa
DBGET
integrated database retrieval system
