Alligator mississippiensis (American alligator): 102577238
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Entry
102577238 CDS
T03087
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amj03016
]
102577238 (RTCB)
Enzymes [BR:
amj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102577238 (RTCB)
Transfer RNA biogenesis [BR:
amj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102577238 (RTCB)
Prokaryotic type
tRNA splicing ligases
102577238 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102577238
NCBI-ProteinID:
XP_006271728
UniProt:
A0A151NHW8
LinkDB
All DBs
Position
Un
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagctacaatgacgagctgcagtacctggataagctcgacaagaactgctgg
cgcatcaagaagggttttgtgcccaacatgaacgtggaaggcgtcttctatgtcaacgac
ccgctggagaagctcatgttcgaggagctgcggaacgcctgccgcggcggcggtgctggt
ggtttcctgcctgccatgaaacaaattgggaatgtggctgcactacctggcattgtccat
agatccattgggcttcccgatgtccattctggctatgggtttgctattggcaacatggct
gcctttgatatgagtgacccagaggcagtggtgtcaccaggtggtgttggttttgacatc
aactgtggtgtccgcttactgcgtacgaatctggatgaatgtgatgtacagcctgtgaag
gaacagcttgctcaggccatgtttgaccatattcctgtgggtgtgggttccaagggtgtc
atccccatgaatgccaaggacttggaagaggccctggagatgggtgtggactggtctctt
cgggaaggatatgcttgggcagaggacaaagagcactgtgaggaatatgggaggatgctg
caggctgatcctaataaggtctcctcaagagcaaagaaaaggggtctgcctcagctgggt
actctgggagcagggaaccattatgcagagatccaggttgtggatgacatctataatgag
tatgctgccaggaagatgggcatcgaccacaaaggacaagtgtgtgtaatgatccacagt
ggcagcagaggtctgggccaccaagttgctacagatgcattggtggccatggagaaagct
atgaaacgagacaagatcatagtgaatgatcgccagctggcatgtgccaggattgcttct
ccagagggacaggactacttaaaaggaatggctgcagctgggaactacgcatgggttaac
cgctcttccatgactttcctaactagacaggcctttgccaaagtcttcaacacgactcct
gatgaccttgatatgcatgtgatctatgatgtgtcacacaacattgccaaagtggagcaa
catgtggtggatggaaaagagcggaccctgctggtgcatagaaaaggatcaactagagct
ttcccccctcatcatcctctcattgctgttgattaccagctgactggacagccggtgctg
attggtgggactatgggcacctgcagctatgttcttactggtacggatcaaggcatgacc
gagacctttggaaccacttgccatggagctggtcgtgcactatcccgagccaaatctcga
cgtaacttggacttccaggatgtgttggacaagctggctgacatgggcattgccattcgt
gttgcttctcccaaactggtcatggaggaagcaccagaatcctataagaatgtgacagat
gtggtaaatacgtgccatgctgctggcatcagcaagaaggctatcaaactgagacctatt
gctgttattaaaggatag
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