Alligator mississippiensis (American alligator): 102577303
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Entry
102577303 CDS
T03087
Symbol
ARID1A
Name
(RefSeq) AT-rich interaction domain 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102577303 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102577303 (ARID1A)
03021 Transcription machinery [BR:
amj03021
]
102577303 (ARID1A)
03036 Chromosome and associated proteins [BR:
amj03036
]
102577303 (ARID1A)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Helix-turn-helix
ARID
102577303 (ARID1A)
Transcription machinery [BR:
amj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102577303 (ARID1A)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102577303 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
102577303
NCBI-ProteinID:
XP_019344474
LinkDB
All DBs
Position
Un
AA seq
1911 aa
AA seq
DB search
MKYIQYSQPSSPMDQMGKMRPQPYGGSNPYAQQQGPQSGPQQGHGYPGQPYGPQTPQRYP
MAMQGRTQSAMGSISYAQQIPPYGQQGPSAYGQQSQTPYYNQQGPHSQQQQPPYSQQPPS
QTPHTQPSYQQQQQPQSQPPQLQSSQPAYSQQQSQPQHQQSPSPYPQQPSTAQQHQPSQP
PYTQQQSQSPYQQQQTPQTASSALSQQSSSYPQSQPQQQQQQSAYSQQRFPPPQELSQDS
FGSQASSAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISS
SQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRP
PSGQSDSILHPSMNQSTIAQDRGYMQRNPQIPQYSSPQPGSALSPRQSSGGQMHAGMGPY
QQNSMGTYGPQGAQYGPQGGYPRQPNYNAMPNANYPSPGMGGTMNPMGAGSQMHGQTGVP
PYTGLPPGRMSHATMGNRPYGPNMANMPPQVGTGMCPPPGGMNRKAQEAAAAAMHAAANS
IQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGAPYPMGANMANNSAGMAASPEM
MGLGDVKLTPAAKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKLWVDRY
LAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSS
AASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQTKIQPPSPAGSGSMQGPQTP
QSTSSSMAEGGDLKPPTPASTPHSQMPPLSGIRSNSVGLQDAFADGSDPTFQKRNSMTPN
PGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFLSSGQGPNSAMGDPYNRAAGPGM
GNMAMGQRQHYPYGGPYERVRTEAGMGPEGSLGTGTPQPNILPSTPDSGMYSPSRYPQQQ
QQQQQQPQRHDSYGNQFSTQGTSSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEG
EMYNVPYSAGQGQAQQQLPAAQTQQPSQQQTAQPSPQQDMYNQYGSTYPATDRRPAGGPQ
NQFPFQFSRERVSAPPGSNAQQNMPPQMMGGPIQSTPEGPQQGTMWQGRNEIGYSYPNRQ
STGSTPQGPAYHGVNRTDEILHSDQRVNHEGPWPSHGNRQPPYGPAAPVPPMTRPPQSNY
QTPPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPAAVQP
PMIRRDITFPPGSVEATQPVLKQRRRLTAKDIGTPEAWRVMMSLKSGLLAESTWALDTIN
ILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPERFCK
SSSPSLDEGEYEEEPQSPNCEEEEEDEEEEEEAAFASKDKAPLESSEEKLVSKFDKLPVK
IVQKNDPFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFESKMELPWIHRRASCS
AAARKRLAAESNPGAREGETPPSDGPPEKRITATMDDMLSARPGSLPEEEEEVKNLEAAK
ESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCICVSNIIRSLSFV
PGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLE
MLRENTLVTLANISGQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPFPTLGPSAVLSP
QRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANL
AQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLMHMQNPPFESTSVDMMRRA
ARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
5736 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatatccaatacagccagccatcaagcccaatggatcagatggggaagatgaga
cctcagccatatggaggaagtaacccatacgcacagcagcagggacctcagtcagggccg
cagcaaggacatggatatccaggacagccatatgggccacagactccccagagatatcca
atggcgatgcaaggcaggacgcaaagtgcaatgggcagcatctcgtatgcacagcagatt
cctccttacggacagcagggccccagcgcgtatgggcagcagagccagactccatattac
aaccagcaaggtcctcattcccaacagcagcagcctccatattctcagcagcccccatcc
cagacccctcacacccagccttcttatcagcagcaacagcagcctcagtctcagcctccg
cagcttcagtcatcccagcctgcatactcccagcagcagtcccagccacagcatcaacag
tccccatctccgtatcctcagcagccatccacagcccagcagcatcaaccgagtcagccc
ccctacacccagcagcagtcacagtcaccctaccagcagcagcagactccacagacagcg
tcctcagctctctctcagcagtcctcttcataccctcagtcacaaccgcagcagcagcag
cagcagtctgcatactcccagcaacgattcccacctcctcaggagttatctcaagactca
tttgggtcacaggcatcatctgccccttcaatggcttccagtaaaggacaagaagatatg
aacttgaatcttcagtccagaccctccagtctgccggacctgtctgggtcaatagatgat
ctccccatgggtaccgaaggagccctgagtcctggagtaagcacgtcagggatttccagc
agccaaggagagcagagtaacccagctcagtctcctttctctccgcatacctctcctcac
ctaccaggaatcagaggaccttccccttcccctgttggatctcctgccagcgttgctcag
tcccgttctggcccgctctcacctgctgctgtaccaggcaatcagatgccaccccgacca
cccagcgggcagtcggacagtatcctgcatccttccatgaaccagtcaaccatagcccaa
gaccgaggttacatgcagaggaatcctcagataccccagtatagctcccctcagcccggc
tctgccttatctccacgtcagtcttctggtggacagatgcatgctgggatgggaccttat
cagcagaactccatgggaacctatggaccgcagggggctcagtatgggcctcaaggaggc
tatcccaggcagccaaactacaatgccatgcccaatgccaactaccccagtcccggaatg
ggaggaaccatgaacccgatgggagcagggagccagatgcatggccagactggtgtgcca
ccttatactgggcttcccccgggaaggatgagccatgcaaccatggggaacaggccctat
ggacccaacatggcaaatatgcctcctcaggtgggaacagggatgtgtcccccgccaggt
ggcatgaaccggaaagcacaagaagcagctgctgctgccatgcatgctgctgccaactcc
attcagaacaggccacctggctatcccaacatgaaccaaggtggaatgatggggactggg
cctccttatggacaaggaatcaacagtatggctggcatgataaacccccagggtgctccg
tatcccatgggagcgaatatggctaacaactccgcagggatggcagcaagtcctgagatg
atgggccttggggatgtcaaactaacacctgcagctaaaatgaacaacaaggcagatggg
acgccaaaaacagaatccaagtcaaagaagtccagttcctctactaccaccaatgagaag
attaccaaattgtacgagctgggtggtgaaccagaaaggaagctttgggtagaccgttac
ctagccttcaccgaagagaaagcgatgggcatgaccaatctcccagctgtgggcaggaaa
cccctagacctttaccggctctacatctccgtaaaggagatagggggactgactcaggtc
aacaaaaacaagaaatggcgggagttagccaccaatctcaacgtgggcacgtctagcagc
gcagccagttctttgaagaagcagtatatccagtgtctctatgcctttgagtgcaagatc
gagcgaggtgaagaccctcctccagatatctttgcggctgctgattcaaagaagtcccag
actaagatacaacctccatctccagcgggttcaggctccatgcagggtccccagacacct
cagtccaccagcagctctatggcagaaggaggagacttgaaacccccgactccagcatca
acgccacacagtcagatgccccctttgtcaggcatcaggagcaactcagttggccttcag
gatgcctttgcagatggcagtgatcccacgttccagaagcggaactccatgactccaaat
ccagggtaccagcccagcatgaatacctctgacatgatgggtcgcatgtcctacgagcca
aataaggatccttatagcagtatgaggaaagctcctggaagtgatcccttcctgtcctca
gggcagggccccaacagtgctatgggtgacccttataatcgtgctgcaggtcccggaatg
ggtaacatggccatggggcaacggcaacactatccctatggagggccttacgagcgagtg
aggacggaggctggaatgggacccgagggcagcttgggcaccggcactccgcagcccaac
atcttgccttccactcctgactcggggatgtactctcccagccgctatccacagcagcag
cagcagcagcagcaacagccgcagagacatgattcctatggcaatcagttttccactcaa
ggcacatcttctggcagccccttccctagccagcaaaccaccatgtatcagcagcaacag
cagaactataagcggccgatggatggcacttacggtccccctgccaaacggcacgaaggg
gagatgtacaacgtaccgtacagcgccggacaggggcaggcgcagcagcagctgcctgca
gcacagacccagcagccgagccagcagcaaactgcacagccttctccgcaacaggacatg
tacaaccagtatgggagcacgtaccctgctactgaccgccggcccgctggagggccccag
aaccagttcccattccagttcagcagagagagggtctcggcccccccaggctcaaatgct
cagcagaacatgccgcctcagatgatgggtggtcccatccagtctactccagaggggccg
cagcagggcaccatgtggcaagggcgcaatgaaatagggtacagctatccaaatcggcag
agcactggctcgacgccccaggggcctgcttatcatggagtaaaccgaacagatgaaatc
ctacattcagatcagagggtcaatcacgagggcccgtggccttcccatggcaaccgtcaa
cctccttatggccccgctgcccccgtgcccccaatgacgagacccccgcagtctaactac
cagacccctcctagcatgcagaatcacattcctcaggtatccagcccagcacctctgccc
agacctctggagaaccgcacctcacccagtaaatctccgttcctgcactcggggatgaaa
atgcagaaggcaggacctcctgtccctgcctctcacatagcaccagcagctgtgcagcct
cccatgatacggagggacatcaccttcccacccggatcagtggaagctacacaacctgtg
ctgaagcagaggagacggctgacagcaaaagatattgggactcctgaagcctggcgggtg
atgatgtctctgaagtctgggctgctggctgaaagcacgtgggccttagataccataaac
atcctgctctatgatgacaacagcataatgaccttcaacctcagccagctgccggggttg
ctagaactcctggtggaatacttccggcgttgcctgattgaaatttttgggatcctgaag
gagtatgaggtgggagatccaggacaaagaacactattggatcccgaaaggttctgcaag
tcttcaagtccctctcttgacgagggggagtacgaagaggagccgcagagcccaaactgt
gaggaggaagaggaggatgaggaggaggaagaggaggctgcctttgcgagcaaggacaaa
gcacccctggagagcagcgaggagaagctggtcagcaagtttgacaagcttccggtcaag
attgtgcagaaaaatgacccctttgtggtagattattccgacaagctggggcgagtgcag
gagtttgagagcgggttgctgcactggcggatcggcgggggagacaccacggagcacatc
cagacccacttcgagagcaaaatggagctaccttggattcacagacgagcttcctgcagc
gctgccgcaagaaaacgtttagcagccgagagcaatccgggcgctagggagggagagacc
cctccatctgatggccccccggagaagaggataacggccaccatggatgacatgctttcg
gcccggccagggtccctgccggaggaagaggaagaggtcaaaaacttggaagcagcaaag
gaaagcagcaagttcccattcggtatcagtccagctcagagccacagaaacatcaaaatt
ctggaggacgaacctcacagtaaggatgagacgcccctgtgcaccctcctggactggcag
gactctcttgccaaacgctgcatctgtgtctcgaatatcatcaggagtttatcgtttgtg
ccgggcaatgactttgagatgtctaaacaccccggtctgctgctgattttagggaaactg
attctgctgcatcacaagcatccagagcgcaaacaggcaccgctgacgtatgagaaagaa
gaggagcaggaccaaggggtgagctgcaacaaggtggagtggtggtgggactgcttggag
atgctacgtgaaaacacgctggttaccctggccaacatttctggtcagttggacctctcc
ccttacccagaaagcatctgtttgcctatcctggatggactcctccactgggcagtttgt
ccgtcagcagaggcccaggatcccttcccgaccttggggcccagtgctgtcctctcccct
cagagactggttttggaaacactcagcaaactcagcatccaggacaacaacgtggatttg
attcttgcgactccccccttcagtcgcttggagaagctctacagcaccatggtgcgtttc
ctcagtgacagaaagaacccggtgtgtcgagagatggccgtggtactactggccaacttg
gcacagggggacagcctggcagctcgagcgattgctgtgcagaagggcagcattggcaac
ctgttgggcttcttggaggacagcctggcagccactcagttccagcagagtcaggccagc
ttgatgcacatgcaaaacccaccctttgagtcgacgagtgtggacatgatgcgtcgggca
gcccgagcgctgcttgccctggccaaagtggacgagaaccactctgagttcacgttatac
gagtcgcggctgttggacatctccgtgtcgcctttgatgaactccttggtttcacaagtt
atttgtgacgtactgtttttaattggccagtcatga
DBGET
integrated database retrieval system
