Alligator mississippiensis (American alligator): 106736850
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Entry
106736850 CDS
T03087
Symbol
HIF1A
Name
(RefSeq) hypoxia inducible factor 1 alpha subunit
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04137
Mitophagy - animal
amj04140
Autophagy - animal
amj04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106736850 (HIF1A)
04137 Mitophagy - animal
106736850 (HIF1A)
04148 Efferocytosis
106736850 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
106736850 (HIF1A)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
106736850 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
106736850
NCBI-ProteinID:
XP_014450632
LinkDB
All DBs
Position
Un
AA seq
871 aa
AA seq
DB search
MKMCEKLSSASSFLKKSSFGYKAFQGMKKWGGGPSGKIRFHSHYLHADTGLACASYCLPV
SLRNWHFPSHSRISSERRKEKSRDAARCRRSKESEVFFELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDTGDMETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFDLTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCNNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYESEELLGRSVYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVERPDTKTTQIFKTDVEDTNSLFEKLKQEPDALTLLAPAAGDTIISLDFSSNESDEQ
QCDEVPLYNDVMLPSSSEKLQSINLAMSPLPASETPKPLRSNADPALNREVVSKLEPNTE
PLDLSFTIPQMQETPDSPSDASTSQSSPEPSSPNGYCFDVDNEMANEFKLELVEKFFAID
TEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESASAGSQNTATITIFQQTQ
TPAITPDEIKPVSTERMDDVKTLIVSSSPVHIKSETSSAPASPYGGTRSRTASPIRAGKG
MLDPTEKLCPGTPSLLTVTLSKRSTAVDEELSPKMLALHNAQRKRKMEHDGSLFQAVGIG
SLFQSSGDCGPNASLSWKRVKGCKRNGHNGVEQKTVILLSTDIASKLLGQSMDESGLPQL
TSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtgtgaaaagctcagtagcgcttcaagctttctgaagaaaagctcatttggg
tacaaggctttccagggaatgaagaagtggggaggaggcccatccggcaagattaggttc
cactctcactacctgcatgcagatacaggcttggcatgtgcaagttattgcctgcctgtg
tctttgagaaattggcattttccatctcactccagaattagttcagaacgcagaaaggag
aaatccagagatgcagccagatgccgaagaagcaaggaatccgaagtcttctttgaactt
gctcatcagctgcctttacctcacacggtgagcgcacatctggataaggcctccattatg
agactgaccatcagctacttgcgcatgagaaagctgttggatactggtgacatggagaca
gaagccaaaatggaaaaggagctgaactgcttttacttaaaagcccttgatggatttgtt
atggtgctttctgaagatggcgacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggcctcacacagtttgatctgactggacacagtgtgttcgattttactcatccttgtgac
catgaggagttgagagaaatgcttactcacagaaatggtcctgtgaaaaagggcaaagaa
cagaacacagagcgtagttttttcctccgaatgaagtgtacgctgactagcaggggaagg
acggtgaatataaaatctgcaacatggaaggtactgcattgcacagggcatattcgtgtg
tatgacacatgcaacaatcagactcactgcgggtataaaaagcctcctatgacatgcttg
gtgctgatctgcgaacctattccacatccatcaaatattgaggttcccttggacagcaag
acattcctcagtcgtcacagtcttgatatgaagttttcctattgtgatgaaagaattaca
gagctgatgggatatgagtcagaggaactattgggtcgctccgtctatgaatactatcat
gccctggattctgatcatctgaccaaaacgcaccacgacatgttcacaaaggggcaggtg
accacaggacagtacagaatgcttgctaaacaaggtggatatgtttgggttgaaactcaa
gcaactgttatatacaacactaagaactcgcaaccacagtgcattgtgtgtgtaaactac
gtattgagtggtattgtccagaaggacttgattttctcccttggacaaactgaatgcatg
ttgaaaccagtggagcgccctgacacgaaaacgacccaaatattcaagactgatgtggaa
gataccaacagtctctttgagaaactcaaacaggaaccagatgctttaacactgttggca
ccagctgctggagatacaattatctcgctagatttcagcagtaatgagtctgatgagcaa
caatgtgatgaagttcctttgtataatgatgtaatgctcccctcatccagtgagaaattg
cagagtataaatttggcaatgtccccactacctgcttctgaaactccaaagccacttcgt
agcaatgctgaccctgcactcaatagagaagttgtgtcaaagctggagccaaacacggaa
ccactagacctctcatttaccatccctcagatgcaagaaacgcctgacagtcctagtgat
gcgagtaccagccaaagttcacctgagcccagtagtccaaacggctattgctttgatgtg
gataatgagatggctaatgaatttaaactggaattagtggaaaaattctttgcgatagac
acagaagcgaaaaatccattctctactcaggaaacggatttagacttggaaatgttagct
ccatacatcccaatggatgacgacttccagttacgctcctttgatcagctttctccactg
gagagcgcgtctgctggctcacagaatacagccaccatcaccatatttcagcaaactcag
accccagctattactcctgacgaaatcaagccagtgtcgacagaacgcatggatgacgtg
aaaacgctaattgtttcttcatctccagtccatataaaaagtgaaaccagcagtgcgcca
gcatcaccgtatggtgggactcgaagccgaactgcctctccaatcagagcagggaagggg
atgttagacccgacggagaaattgtgtccaggaacgcccagtttgttaacagttacttta
agtaaaaggtctacggcagtggacgaggagctgagccccaaaatgctagctttgcataat
gctcaaagaaaacgaaaaatggaacatgacggttctctctttcaagcagttggaattggg
tctttattccagtcgtcaggtgattgtggaccaaacgcatcgctttcttggaaacgtgta
aaaggctgcaaacgtaacggccacaatggagtggagcaaaagacggtcattctgctatcg
acggatatagcaagtaagctcctagggcagtcgatggatgagagtggactaccacaactt
acaagttatgactgcgaagtaaacgctcccatacaaggcaacagaaacctgctacaaggt
gaagaattgctcagagctctggatcaagttaactga
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