Alligator mississippiensis (American alligator): 106736904
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Entry
106736904 CDS
T03087
Symbol
CLSTN1
Name
(RefSeq) calsyntenin 1
KO
K22659
calsyntenin 1
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amj04515
]
106736904 (CLSTN1)
Cell adhesion molecules [BR:
amj04515
]
Cadherins
Cadherin related
106736904 (CLSTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
Toxin_R_bind_N
Glyco_hydro_16
EphA2_TM
SID-1_RNA_chan
V_ATPase_I
PFF1_TM
Neur_chan_memb
Cadherin_C_2
Zip
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
106736904
NCBI-ProteinID:
XP_019349490
LinkDB
All DBs
Position
Un
AA seq
969 aa
AA seq
DB search
MVLGAPEEKLSPLLLNHCRNVNKHKPWIETTYHGIVTENDNTVLLDPPLIALDKDAPLRF
AESFEVTVTKEGEICGFKIHGQNVPFEAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQA
YDCGKGPDGANAKKSHKATVHIQVNDVNEYAPVFKEKSYKATVIEGKRYDNILKVEAVDA
DCSPQFSQICSYEIVTPDVPFAIDKDGYIKNTEKLNYGKEHQYKLTVTAYDCGKKRAAED
VLVKISIKPTCKPGWQGWSKRIEYEPGTGSLALFPNIHLETCDEPITSIQATVELETNHI
GKGCDRDTYSEKSLHRLCGASSGTAELLPPPSSTTNWTIGLPTDNGHDSDQVFEFNGTQA
VKIPDGIVTVNLKEPFMISVWMRHSPGTKEKETILCNSDKTDMNRHHYSLYIHNCRLVFL
FRQDPSEGKTYKPAEFHWKLNQVCDKEWHHYVLNVEFPTVTLYVDGVSYDPFPVTEDYPL
HPSKIETQLVVGACWQENTGNENDNETVPETSAGGELHMAQFFRGNLAGLMIRSGKLENK
KVIDCLYTCKEGLDVQTADGIGKGMKIHMNPSQSTVTLEGDDIEKFDKAMQHISYLNSRQ
FPTPGIRRLKITSTVKCFNEEACISIPFVEGYVMVLQPEEPKISLSGINHFARSASEFES
PEGVSLFPELRIISTITREVEPEGDGDEDPTVQESLVSEEIMHNLDTCEVTVLGEELNQE
QESLEVDMTRLQQKGIEMSSSNLGMIITGVDTMASYEEVLHLIRYRNWHTVSLFDRKFKL
ICSELNGRYVSNEFKVEVNVIHTANPVEHANHIAAQPQFVHPVHHTFVDLSGHNLANPHP
FSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTITV
NPMETYEDQHSSEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQEEDQQNVNRQQQL
EWDDSTLSY
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggtcttgggagcacctgaggagaaattaagtcctttactgctgaaccactgcaggaat
gttaacaagcacaaaccatggattgaaacaacgtatcatggtatagttacggaaaatgac
aacacggtactcttggatccacctctaatagccttggataaagacgcacctcttcgcttt
gcagagagttttgaggtgacagtcaccaaagaaggtgagatttgtggctttaagattcac
gggcagaatgtcccctttgaggctgtggtagtggataaatccacaggtgagggaataata
cgctctaaagaaaaacttgactgtgaactacagaaagactacacgttcaccatacaggcc
tatgattgtggaaagggaccagacggagctaatgcaaaaaaatcccacaaagcaacagta
catatccaggtgaatgatgttaatgagtatgctccagtgtttaaagagaagtcttacaag
gcaacagtcattgaagggaagagatatgacaacatcctgaaagtggaagctgtagatgca
gattgttcaccccagttcagccagatctgcagctatgaaattgtaactccagatgttccc
tttgcaatcgacaaagatggttacatcaaaaatacagaaaaattaaactatggcaaagaa
caccaatataagcttacagtgactgcatatgactgtgggaagaaaagagctgctgaggac
gtattggtgaagataagcattaagcctacatgcaagcctggctggcaaggttggagtaaa
agaatagaatatgaacctggcactggttctctagctctcttccccaatattcacttggag
acctgtgatgagcccataacttcaattcaagcaacagttgaactggagaccaaccacatt
ggaaaaggctgtgacagagatacctactctgagaaatcccttcacagactctgcggtgct
tcctctggcacggctgagctgcttcctcctccaagtagcactacgaactggacaatagga
cttcctactgacaacggccatgacagtgaccaggtctttgaattcaacggcactcaagct
gtgaagattccagatggcattgttacagtcaatctaaaagagccgttcatgatctcagta
tggatgaggcacagccctggaaccaaggaaaaggagacaatactctgcaattcagacaag
acagatatgaaccggcaccactactctctttacatacacaactgccgacttgttttcctc
ttccgccaagatccttcagagggaaagacctacaaacctgcggaattccactggaagtta
aaccaggtgtgtgacaaagaatggcatcactatgtcctcaatgttgaatttccaacagtg
acactctatgtagatggggtttcatatgaccctttcccagtgactgaggattacccactt
catccttccaagatagaaactcagctggttgttggagcttgttggcaagaaaatacagga
aatgaaaatgacaatgaaactgtgcccgagacctctgcaggtggtgaactccacatggct
cagtttttccgaggcaatctggctgggttaatgatacgttctggtaaacttgagaacaag
aaggtaatagactgcctctatacttgcaaggaaggactggatgtacaaactgcagatggc
attggcaaaggcatgaagatccatatgaaccccagccagtcaacagtgacattggaaggg
gatgatattgagaagtttgacaaggccatgcagcacatctcctacctgaattcccgccag
tttccaacacctggaatccggaggctcaaaatcaccagcacagtcaagtgtttcaatgaa
gaggcctgtatctccatcccttttgtggaggggtatgtaatggtcttgcagcctgaggaa
cccaagatcagcttgagtggcattaaccactttgcccgctctgcctcagagtttgagagt
cctgagggtgtttccctcttccctgaacttcgcataatcagcacaatcactcgggaagtg
gagccagaaggagatggagatgaagatcctacagtccaagaatctttagtgtctgaagag
atcatgcacaacttggatacatgcgaggtcacagtgctgggagaggagttaaatcaggaa
caagaaagcttggaggttgatatgacccgattacaacagaaaggcattgagatgagcagt
tcaaaccttggcatgatcatcactggggttgatacaatggccagctatgaggaggttttg
catttgatacgctaccgaaactggcacactgtctccctctttgacagaaagttcaagttg
atctgctctgagctaaatggacgctatgtcagcaatgaattcaaagtggaggtgaatgtt
atccacacagctaacccagttgaacatgctaatcatatagctgcccaaccacagtttgtc
cacccagtgcatcatacgtttgttgatctctcgggtcacaacctagctaacccccacccg
ttttcagttgtcccaagtactgcgactgttgtgatcgtggtttgtgtgagtttcctggtt
ttcatgattatcctgggagtcttccgaatccgggctgcgcatcagagaacgatgcgtgac
caggatactggaaaagaaaatgagatggattgggatgactctgccttgaccatcactgtg
aaccccatggagacgtatgaggaccagcacagcagtgaggaggaagaggaggaggaggag
gaagaaagcgaagatggtgaggaagaagatgatatcactagtgcagagtctgaaagtagt
gaggaggaagaaggggagcaggaagaggaccaacagaatgttaacagacagcaacagctg
gaatgggacgactctaccctcagctattga
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