Alligator mississippiensis (American alligator): 109285107
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Entry
109285107 CDS
T03087
Name
(RefSeq) SCO-spondin-like
KO
K24434
SCO-spondin
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
amj04990
]
109285107
Domain-containing proteins not elsewhere classified [BR:
amj04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
109285107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_1
TSP1_spondin
F5_F8_type_C
Ldl_recept_a
TIL
TSP1_ADAMTS
TSP1_CFP_C
VWF
F5_F8_type_C_2
TSP1_CCN
VWC
Pacifastin_I
FnI_RECK
Motif
Other DBs
NCBI-GeneID:
109285107
NCBI-ProteinID:
XP_019351025
LinkDB
All DBs
Position
Un
AA seq
1917 aa
AA seq
DB search
PCQLEGCLNVTACPGDLVSRRCAPCPASCTDLSSKVKCRRDRPCSPGCWCPDGLVLAGER
RCVRPRECPCEVEGVRYWPGQLVKVNCRICTCQDGQPRRCRQNPECTVNCGWSAWSPWGE
CLGPCGVQSIQWSFRSPNNPSKHGNGRQCRGIYRKARRCQTEPCEECEHHGRPHAVGDRW
RSGQCQVCQCLPNLTVQCSQYCPYSTVACPEGRVLVEGTGEACCYCAEAGENRTTTLAVP
TAEPPGTSVAGPSAPTSPPLFTFPLPPLGDRCYGPLGLASLPDSSFSASSQQPENPAHAA
RLNRALPGLDLQGWGPQADVYPELLSNPPYLQVDLLEPKNLTGVVVQGAGSSDAYVTSFL
LQFSMDGVRWHDYREAFPDAQLEPKLFQGNFDDATPVVRTFQRLVRARHVRILPQDFHNG
IFLRAELLGCERVPPALPGAPSTLPAHRPCRTGQFQCRNGRCVPAGPRGAVCNGVDDCGD
LSDELRCGIAPSLAPSTPWPCPLSHFPCTGTGGCVDAARRCDGIADCLDGTDEAGCVTLH
GSTVPPAGTMSPSTPGTARVWSTPKEALVWTDSWPFPDGILPTPAGPCTEPLGLDDGRIR
DQQLSASSHRESNPPGAGRLNSMPNVPNIEVGWSPLPDDPSPYFQVDLLQPTFVSAVVTQ
GGTRSGGFITRYRLAYSYDGVHYRDYAPRGGPAQVLEGNVDSSTPVRQELSPAILTRSLR
LVPVAFHRGIYLRLELQGCPWGAAPPGTGPASPAAASEPPPAPPGTPARMPSIANESSEA
KSTSKPMPTGAEPLETTVPAAAIQSPLPGTPAGTPGLREKPEHTGAPALASISPGATEPP
RAVVPGLSTPMPTTGAPGTPGLPWAQVTSPGTPRLPGTTPPAMAAVTVSAGDRGMPGMLT
GSSIPGWPGLATTLPGAALPRLLCTQGQFSCEVLGCVEAGAVCDGREDCLDGSDEWQCGG
PTPFTVPPATLPVPDSRPGACSPKQFLCGSGECLSPDKRCDLHHDCADGSDESSCVDCIL
SPWSGWSECSRSCGLGVTFRRRDLLRRALPGGQCERNEFDSRSCFLRACPVHGAWAAWGE
WSDCDAECRGGVRSRTRSCADPPPKNGGQACPGDAVQTEPCNLQPCGDARDCGPEMVYVQ
AADCERGLVAPCPQACRDLGAQRSCQSPCVEGCRCPPGLFLQDGGCVNVSQCHCHVGPEP
HRPGEMFLRDNCSQCVCLDGVVTCDSVPCPMPCGWSAWSAWTPCDRSCGVGMQERFRSPS
NPTAANGGAPCDGDAQEVRECHTPCPAEPPGPWSAWTPWSPCSKTCFYDVDRVGVRKRFR
HCNGTGELSEGGSCQGPSVQEEPCDTPPCPMEGVWTPWTAWSSCSAACDSGVQIRNRTCS
NPAYGGPECSGPLVQTRDCNTQPCKALCPGNMVYRTAKECQEHGGACPRLCLDQDVGVEC
AAHCYDGCYCPAGLRLLNDTCVPPTACPCHHQGLLYPPGTTAPLDACNNCTCISGEMVCS
TEPCPVDCGWSSWTVWSSCSRSCNVGTQRRYRAASQPPAAFGGRECPGPSVEVTFCSLQP
CKGAGAEWGPWSECSVPCGGGYQNRTRASATLRRVEFATCNLQPCAGEKPGVCPAGKVWQ
ECADVPASCAELSTAFLANRTCHAGCYCPPGAILLDNQCVAASECPCTEAGVLYRPGDTV
TRGCETCSCVFGRISNCSRGPCGHANGSWSEWTPWSECSASCGLGLQNRYRFCTDPMPAG
TGLPCLGPESEVQPCHLQPCSRIGGWGAWSPWGECTRSCGGGLRTRTRGCDNPPPQGQGD
YCEGTPTQVEACHPHDCPALECTVVKGSVYSRCGPSCPRSCDDISHCVWSCEPGCYCTHG
QVLSENGTACVDPRDCTCLDLLSSRRHLPGQTVPRGDGCNHCTCTRGKMLCTSLPCA
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
agccctgccagctggagggctgcctcaatgtcaccgcctgccccggggacctcgtgagcc
gcaggtgcgcgccctgccccgcttcctgcaccgacctgtccagcaaggtgaagtgccgca
gagaccggccctgcagcccaggctgctggtgcccggatgggttggtgctggccggggagc
ggcggtgcgtgcggccgcgggagtgcccctgcgaggtggagggcgtgcgctactggcccg
ggcagctggtcaaggtcaactgccgcatctgcacctgccaggacgggcagccccggcgct
gccgccagaaccccgagtgcacagtgaactgcggctggtcggcctggtcaccgtggggcg
agtgtctggggccatgcggcgtgcagagcatccagtggtccttccgcagccccaacaacc
ccagcaagcacggcaatgggcgccagtgccgcggcatctatcgcaaggcccgcaggtgcc
agacagagccatgcgaggagtgtgagcatcatgggcggccccacgccgtcggcgaccgct
ggcgctcggggcagtgccaggtgtgccagtgcctgcccaacctgacagtgcagtgctccc
agtactgcccctacagcaccgtggcctgccccgagggccgggtgctggtggagggcacgg
gggaggcctgctgctactgcgcggaggctggtgagaacaggaccacgacactggccgtgc
cgacagccgagcccccggggaccagcgtggccggccccagtgcccccaccagcccgcctc
ttttcaccttcccactgccgcctctcggagaccgctgctacggccccctgggcctggcct
ccttgccggacagcagcttctctgcctcatcccagcaacccgagaaccccgcgcatgccg
cgcgcctcaaccgggcgctgccggggctggacctgcagggctgggggccccaagcggacg
tgtaccccgagctcctctccaaccccccttacttgcaggtggaccttctggagcccaaga
acctcactggggtggtggtgcaaggtgcaggctcctcggatgcctacgtcaccagcttcc
tcctgcaatttagcatggacggggtgagatggcatgactaccgcgaggccttcccagatg
cgcagctggagcccaagctcttccagggcaactttgacgatgcaacccccgtggtgcgaa
ctttccagcgcctggtgcgggcccggcacgtccgcatcctgccccaggacttccacaacg
gcatcttcctgcgcgctgagctgctgggctgcgagagagtgccccccgcgctgcctggag
cccccagcacgctgcctgcccaccggccctgccgcaccggccagttccagtgccgcaatg
ggcgctgcgtccccgccggaccccgcggtgctgtctgtaacggggtcgatgactgcggag
acctctcagacgagctgcgctgcgggattgccccatcgctggcgccctcaaccccatggc
cgtgcccgctgtcccacttcccctgcacggggaccgggggctgcgtggacgcggcccgga
ggtgcgacggcattgccgactgcctggacggcacggacgaggccggctgcgtcaccctgc
atgggagcacagtgcctcctgcaggcacgatgagcccctccacccccgggacagcccgtg
tctggagcacgcccaaggaggcgctggtgtggaccgacagctggccgttccccgacggca
tcctgcccacccccgcaggtccttgcaccgagccgctggggctggacgacggccggatcc
gggaccagcagctgagcgcatcctcccaccgggaaagcaaccccccaggcgctgggcgtc
tcaacagcatgcccaatgtgccgaacatcgaggtgggctggagcccgctgccggacgacc
ccagcccctacttccaggtggacctgcttcagcccacctttgtgagcgccgtggtcacgc
agggcgggacacgctcgggggggttcatcacccgctaccgcctggcctacagctacgacg
gcgtgcactaccgcgactatgccccccgcggcggcccggcacaggtgctggagggcaatg
tggacagcagcacacctgtgcggcaggagctgagccccgccatcctgacccgttccctgc
gcctggtgcctgtggcatttcaccgcggcatctacctgcgcctggagctgcagggctgcc
cctggggtgctgctcccccagggaccggacctgccagtcccgctgctgcctcagagccac
ccccagcacccccggggactccagctaggatgcccagcatagccaacgagagcagtgagg
ccaagtccacgagcaagccaatgcccacgggagcagagccactggagacaacagtccctg
ccgcagccatccagagccccttgccggggacaccagccgggacgccggggctgcgggaga
agcccgagcatactggagcccccgcgcttgccagcatcagccccggtgcgacagagcccc
ccagagcagtcgtgcctgggctaagcacccccatgcccaccacaggggctccggggaccc
ccgggctgccctgggcacaggtgacctctcctgggacaccgcgcctgccgggaaccaccc
cgccagccatggctgctgtgacggtgtcagctggagaccgcgggatgcctgggatgctca
cgggatcctccatcccaggctggcctgggctggccaccaccctcccaggagctgcgctgc
cccggctcctgtgcacccagggccagttctcctgcgaggtgctgggctgtgtggaggcgg
gcgccgtgtgcgacgggcgcgaggactgcctggacggctctgatgagtggcaatgcggcg
gcccaacgcccttcacggtgccccccgccaccctgccagtgcccgacagccgccccggcg
cctgctcccccaagcagttcctgtgcggcagtggggagtgcctgtccccggacaagcgct
gcgacctgcaccacgactgtgccgacggctccgacgagagcagctgcgttgactgcatcc
tgtctccctggagtggctggagcgagtgcagccggtcgtgcgggctgggggtgaccttcc
ggcgccgggacctgctgcgccgtgccttgcccggcgggcagtgcgagcgcaacgagtttg
acagtcgctcctgcttcctccgcgcctgcccagtgcacggtgcctgggccgcatggggcg
agtggtcggactgcgatgcggagtgccggggcggggtgcggagccgcacgcggagctgcg
ccgaccccccgcccaagaacgggggccaggcttgccccggtgacgctgtgcagacagagc
cctgcaacctgcagccctgcggggatgcccgcgactgtggccctgagatggtgtacgtgc
aggctgcggactgcgagaggggccttgtggcgccgtgcccccaggcctgccgcgacctgg
gcgcccagaggagctgccagagcccctgcgtggagggctgccggtgcccccccgggctct
tcctgcaggacggtggctgtgtgaatgtcagccagtgccactgccacgtgggccccgagc
cgcaccgtcccggggagatgtttctgcgtgacaactgcagccagtgcgtgtgcctggacg
gcgtggtgacgtgtgactccgtgccctgccccatgccctgcggctggtcggcctggtcgg
cctggacgccctgcgaccgcagctgcggcgttggcatgcaggagaggttcaggtcaccct
ccaaccccactgcagccaacggcggggccccctgcgatggggacgcccaggaggtgcggg
agtgccacacgccctgccccgccgagccgcccgggccctggagcgcctggaccccatggt
cgccctgctccaagacctgcttctacgacgtggaccgagtcggggtgcggaagcgtttcc
gccactgcaacggcactggggagctcagcgaagggggcagctgccaggggccatccgtgc
aggaggagccatgtgacacgccgccctgccccatggagggcgtctggaccccatggacgg
cctggtcctcctgctcagccgcctgcgactccggtgtccagatccgcaaccggacctgct
ccaacccggcctatggcgggcctgagtgctcggggcccctggtccagacccgcgactgca
acacgcagccctgcaaggcgctgtgcccggggaacatggtgtaccgcacggccaaggagt
gccaagagcacggcggcgcttgcccacggctctgcctggaccaggacgtcggcgtggagt
gcgccgcccattgctacgatggctgctactgccctgccgggctccggctgctcaacgaca
cctgtgtgccacccaccgcctgcccctgccaccaccagggcctgctctacccacctggca
ccactgccccactcgacgcctgcaacaactgcacctgcatctctggggaaatggtgtgca
gcacagagccttgtccagtggactgcggttggagcagctggacggtgtggagctcctgca
gccgtagctgcaacgtgggcacacagcggcggtaccgcgctgcctcccagccgcctgctg
cctttgggggccgtgaatgcccgggccccagtgtggaggtcaccttctgcagcctgcagc
cctgcaagggtgcgggggcagagtggggtccctggtccgagtgctcggtgccctgcgggg
gtggctaccagaaccgcacgcgggccagcgccaccctccgccgggttgagttcgccacct
gcaacctccaaccctgtgctggcgagaagcccggtgtctgcccggccgggaaggtctggc
aagagtgcgccgacgtgccggcctcgtgcgccgagctgagcacagcgttcctggccaaca
ggacgtgccacgccggctgctactgcccacccggtgccatcctgctggacaaccagtgcg
tggcagcgtccgagtgcccgtgcaccgaggccggcgtgctgtatcgccccggcgacactg
tgaccaggggctgcgagacctgctcctgcgtattcggccgcatctccaactgctcccgcg
ggccctgtgggcatgcgaatggcagctggtcggagtggaccccctggagcgagtgctcgg
cctcctgcgggctgggcctccagaaccggtaccgcttctgcacggaccccatgcccgccg
gcaccgggctgccctgcctgggccccgagagtgaggtccagccctgccacctccagcctt
gctcacggattgggggctggggtgcctggagcccctggggcgagtgcacccggagctgcg
gtgggggcctgcggacccggacccgcggctgcgacaaccctccaccccagggccagggcg
actactgtgaggggacccccacccaggtggaggcctgccacccccatgactgcccagcgc
tggagtgcacagtcgtgaagggctccgtgtacagccgctgcggcccctcctgcccccgct
cctgcgatgacatctcgcactgcgtctggagctgcgagcccggctgctactgcacccacg
ggcaggtgctgagcgagaacggcacagcctgcgtggacccacgggactgcacctgcctgg
acctgctcagcagccgccggcacctgcccggccagacggtgccccggggcgatggttgca
atcactgcacctgcaccagggggaagatgctctgcaccagcctgccctgcgcag
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