Alteromonas macleodii Black Sea 11: AMBLS11_00390
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Entry
AMBLS11_00390 CDS
T02260
Name
(GenBank) superfamily I DNA/RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03420
Nucleotide excision repair
amk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMBLS11_00390
03430 Mismatch repair
AMBLS11_00390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_00390
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBLS11_00390
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMBLS11_00390
MMR (mismatch excision repair)
Other MMR factors
AMBLS11_00390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
DUF5710
SLFN-g3_helicase
AAA_30
UvrD_C
UvrD_C_2
UvrD-helicase
ResIII
PhoH
nSTAND3
DEAD
AAA_22
AAA_16
NTPase_1
AAA_11
Viral_helicase1
AAA_5
AAA_28
AAA
Mg_chelatase
AAA_25
Sigma54_activat
AAA_18
NPHP3_N
cobW
ATPase
RuvB_N
Motif
Other DBs
NCBI-ProteinID:
AFT76672
LinkDB
All DBs
Position
complement(92864..94234)
Genome browser
AA seq
456 aa
AA seq
DB search
MRMPNARDMSDEQQDIFEDAPLDGRVLITGPPGTGKTVIAFLRAMLLAKENKKVDVIMYN
RVLKRFAQNVGADSRNVSCSTFHSWFYNWWGNLRIENQVAESAELIYLTTPFERRLEVKK
KGARWDNNARSWTATQAVINRAPEVFAPWLPGPRDGTPITRVNKATYDAPEIRKFKPDWD
RLIDLYTDAEPEKQKGWGHLIIDEGQDFCNDTYKFLKYASRVSESDSAITVLADDNQRLG
EENSTTTQIADLLNIGEDRKFTLSRNFRNTRPIALLARKFYTGLPSGTPDLPDKKGNKPR
LVCDANVQQQVEYIARYLRLRGNHEVGVVLPDNKLREQFFSLLTGMLTNYTVQTYDSNDR
NTSDSLIFDRQGVVTVLNRQSCKGLEFDVVFLPCLQDYEAEDTDSDTFKMNMYVMCSRAR
NELIMMSETPAKSDAGAMKYLPVNEPELLELISSRE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgccgaacgcccgcgatatgagcgatgaacagcaggacattttcgaagacgct
ccgctggatggtcgcgtactgattacaggcccgccgggtacaggaaaaacagttatcgca
ttcctgagagccatgctgctcgcaaaggaaaataaaaaagttgacgttattatgtacaac
cgggtgctgaagcggtttgcccagaatgtcggggctgactcgcggaatgtgagctgcagc
acattccattcgtggttctataactggtggggaaatctgcggattgaaaaccaggttgca
gaaagcgcggagctcatctatctgacgaccccctttgaaaggcgattagaggtgaaaaag
aaaggagcaagatgggataataatgcgcgttcatggactgcaactcaggcagtaataaac
agggcgcccgaagtctttgcgccgtggttaccaggtccaagggacggaaccccgataacc
agagtaaataaggctacgtatgatgcgccggaaatacgaaagtttaagcctgactgggac
aggctcatcgacctgtacaccgatgcagagccggaaaaacaaaaaggctggggacacctg
atcattgatgaggggcaggacttctgcaatgacacctacaaatttcttaaatacgcgtca
cgcgtttctgaaagtgactctgccattacggtacttgctgatgataaccagcggctgggc
gaagagaattcaaccacaacgcagattgctgatttgctgaatatcggcgaagacagaaag
tttacattaagccggaatttcaggaatacccggccaatcgctctgctggcacgcaagttt
tatactggcttaccatccggaacaccggatttacccgataaaaagggaaacaaaccgaga
ctggtatgtgatgcaaacgtgcaacagcaggttgaatacatcgcccgctatctcagactc
cgtggaaatcatgaagtcggcgttgtattacctgacaataaactcagagagcagttcttc
agtttactgaccggaatgctaacaaattataccgtccagacttatgacagtaatgaccgc
aatacaagtgacagtctcatatttgacaggcagggggttgtaaccgttcttaaccggcag
agctgcaaaggtcttgaatttgatgttgtatttcttccctgcttacaggattatgaggca
gaagatacagattcagacacctttaaaatgaacatgtatgtaatgtgttcgcgggcaaga
aatgaactgatcatgatgtcagagacccctgcaaagtctgatgcaggcgcgatgaaatat
ctgccggtaaatgagccggagttgctcgaattaatatccagccgggaatag
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