Alteromonas macleodii Black Sea 11: AMBLS11_00735
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Entry
AMBLS11_00735 CDS
T02260
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBLS11_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amk03019
]
AMBLS11_00735
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_00735
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBLS11_00735
Messenger RNA biogenesis [BR:
amk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBLS11_00735
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMBLS11_00735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
T4SS-DNA_transf
PB4_spike
Motif
Other DBs
NCBI-ProteinID:
AFT76741
LinkDB
All DBs
Position
complement(176154..177995)
Genome browser
AA seq
613 aa
AA seq
DB search
MTTAIAPSELAPETQRVKTPETVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGK
SLCYQIPALVRQGTAIVVSPLISLMQDQVEQLKALGVNAAYLNSTLEADEQARINDALQA
GKLDLLYVSPERLMQYYFQQSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFP
SIPVIGLTATADSATQADILTQLNLNEPLVYKGSFDRPNIRYRVMSKYKAFDQVVAYVKQ
QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQ
GEIAERNQIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPKMIDGLV
IAQKVLSCVLRLSQQASSQYVIDVLRGKQLRRLQEAGHHQLSTYGIGKDKSDSYWHNIIN
QLVHKGLIRVDITAHAALRLTEAARPVLKGEVAVQLAVPRLEFKPDKKKAKHAPANYDRT
LFTRLKHLRKVLAEENEVPPYVVFSDATLVDMACKLPTTRNTLLDVSGVGQTKLERYGEA
FIQLIDDYINREH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgcaatagctccatcagaattagcgccagaaacgcaacgtgtaaaaacacca
gaaaccgtcttaaaagatgtatttggttacgatgcttttcgcgacggtcaaggcgaagtc
attcaccaagtatgtgaaggtaaagacgcacttgttttgcttccaacaggtggaggtaag
tcgctgtgctatcaaattcctgcgttagtgcgccagggcaccgctattgttgtgtcaccg
cttatatcgcttatgcaggaccaagtagaacagcttaaagcgctgggcgtaaacgctgcc
tatctcaattcaacgctggaagcagacgaacaagcgcgcataaatgacgcactacaagca
ggaaagctggacttgctctacgtgtcgcctgagcgtttaatgcagtattattttcagcag
tcgcttgcacatgccgacattgccctatttgccattgatgaagcgcactgcgtctcccac
tgggggcatgacttcaggcaggattatcgcgctctggggcaaataaagtctcgctttccc
tctattcctgttattggacttacagctactgcagattcagccacccaagcagacatactg
acgcaactcaacctcaacgagccgctggtttataagggcagcttcgacagacctaatatt
cgctaccgcgtaatgagcaagtacaaagcctttgatcaagttgttgcttacgtaaaacaa
caagaaggtagcggtattatttactgtaacagtcgcgcgaaagttgacgacctgcacgct
aaattattcagacaaggttttcgctgtgcggcatatcacgcgggaatggataacgacgag
cgagagctggtacaacgccagttccttaacgataaaattgatattgtggtggctaccgtt
gcctttggcatgggtatcaacaaatcgaacgtgcgttatgtggttcaccacgatgttccg
cgcagtgttgaaagctattatcaggagaccggccgagctgggcgagacggcctggaatct
gaagctttactattgttcgacgaaaaagacgcagcccgtgtaaaacaatggatagagcaa
ggtgaaatagccgagcgaaaccaaatagagttacaaaaatttgcggctatggaagccttt
tcagaagcgcaaacctgccgtagacaagtattgttaaactacttctctcagtttagcgac
agcgcctgtggcaactgtgatatctgcttagacccacctaagatgatcgacggattggtg
attgcacaaaaagttctgtcgtgtgtacttcggctctcacagcaagcctctagccagtat
gtcattgatgttttgcgaggcaagcagcttaggcgtcttcaggaagcaggccaccaccag
ctttccacatacggcataggtaaagataagtcggatagctactggcacaacattatcaac
caacttgttcataaagggcttattcgcgttgatattaccgctcatgccgcgctacgttta
accgaggccgcacggccagtgctcaagggcgaggtcgccgttcagcttgccgttccgcga
cttgaatttaagcccgataagaaaaaagctaaacacgcgccagccaattacgacagaacg
ctgttcacgcgccttaagcatttgcgtaaggtgttggcagaagaaaacgaagtgccaccg
tatgtggtatttagcgacgccaccttagtggatatggcgtgtaaactccccactacgcgc
aataccttattagatgtaagcggcgtaggccaaaccaaactcgagcgctatggtgaggct
tttatccagcttattgatgattacataaatcgagagcactga
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