Alteromonas macleodii Black Sea 11: AMBLS11_02805
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Entry
AMBLS11_02805 CDS
T02260
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBLS11_02805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amk03019
]
AMBLS11_02805
03009 Ribosome biogenesis [BR:
amk03009
]
AMBLS11_02805
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMBLS11_02805
Messenger RNA biogenesis [BR:
amk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBLS11_02805
Ribosome biogenesis [BR:
amk03009
]
Prokaryotic type
rRNA helicases
AMBLS11_02805
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFT77153
LinkDB
All DBs
Position
complement(653764..655590)
Genome browser
AA seq
608 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLKGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
VLMAALLKIAQGDEPLILKESDRPDINSKPQRDSRDRNARDGRDGRERKPKVPRGNRKPE
EGMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPEGMPKETRD
TLQGTRVAGQRLNIREWSDTPPAKGRGDRGDRGNRGDRAPRGNREDRPRGNREDRPNRGD
RENRKRKN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaactgtcgacatgacatttaaagacctcaatttaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagcagagagtattcctctt
ttacttaaagggcacgatttactcggtcaggcacagacagggacaggaaagaccgctgcg
tttgccctgcctatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaactagctattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttccagtatacggcggtcagtcgtacgacaaccaaatt
cgccagcttaaacgcggcgttcaagtggttgtgggtacaccaggccgtatcatcgaccac
attaagcgcaagacactagacttaagcgagcttaagttcctagttctagacgaagctgat
gaaatgcttcgcatgggctttattgatgatgttgagcttattcttagccacgcaccagaa
gagcgccaaacggccttattctcagcaactatgcctggcccaattaagaagatcactcag
cgttacttgaaagaccctaagcacgttaaaattgcgtctaaggtaagtacggctagcacc
attcgccagcgttattgccaaattgcaccgcaccacaagcttgaagcgctaacgcgtatc
atggaagtggaagtgtttgacggcatgattattttcgtacgcacaaaaacggcaacggtt
gaactcgctgataagctatctgctcgtggttacgatgtagagccgctgaacggtgatatt
cctcaggctgcccgtgaacgtactgttgaaaaacttaaacagggtaagatcgacattctt
gttgctaccgacgtagtagcccgtggccttgacgttgagcgtgtaagccacgttattaac
tacgatattccttacgacagcgaatcttacgtacaccgtatcggccgtacgggtcgtgct
ggtcgtcaaggtgatgcgatcctatttatctctcaccgtgaaaagcgcttgttattctct
atcgagaaaaccaccaagcagcctattgaagcaatgccaattccttcaatcagcgaaatt
aacgaaacccgtttaagccgcttcaaacaatcggttgccgaagcaacccaagacgatagc
attgaatcattaatgcctattgttgagatgattaaagaagaaaacgaagcgtctcctgaa
gtattgatggcagcactgcttaaaattgcgcaaggcgacgaaccgttaattcttaaagaa
tcagatcgtccagatattaatagcaagcctcagcgcgatagccgtgacagaaatgctcgt
gacggtcgtgacggtcgcgaaagaaagccaaaagttcctcgtggcaaccgcaagcctgag
gaaggtatgcagcgcttccgcattgaagtaggccacgtacacggtgctaagccaggtaat
atcgtaggcgctattgctaatgaagctaacattaattctaagcacattggcgctatcgaa
atttatgataacttcagtacagttgaccttcctgaaggcatgccaaaagaaactcgtgac
accctacaaggtactcgtgttgcgggtcagcgcctgaacattcgcgaatggtcagacacg
ccaccagcaaaaggtcgtggtgaccgtggcgaccgtggtaaccgcggtgacagagcgcct
cgcggcaatcgtgaagaccgccctcgtggtaatcgcgaagaccgaccaaaccgtggcgac
cgcgaaaaccgtaagcgtaagaactaa
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