Alteromonas macleodii Black Sea 11: AMBLS11_03970
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Entry
AMBLS11_03970 CDS
T02260
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
amk
Alteromonas macleodii Black Sea 11
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_03970
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AMBLS11_03970
Archaeal homologous recombinant proteins
AMBLS11_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_21
AAA_29
SMC_N
ABC_tran
Laminin_II
HrpB7
cobW
nSTAND3
NTPase_1
Ribosomal_L17
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AFT77384
LinkDB
All DBs
Position
931695..935432
Genome browser
AA seq
1245 aa
AA seq
DB search
MRILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGPISTSNNDIMTRGTAECLAEVEFDIKGKAYRAFWSMRRARGKVDGNLQSADVELAEVE
SGKVLATQVRPKSEEIEKLTGLNFARFTKSMMLSQGDFAAFLNANEADRAELLEELTGTE
IYGQISQAVHQQFSDAKQKKKEFAIKLEGVTLLSDEQITQLEEEQAQTKSQVATSNQTLV
QLQKQQQWQQAFNANELSIKEASEAQQSANNAINEAKHELELLTQSEPAEKLRLPFLQRN
GLQQDVTRYKERLEEKAAQLPDLKSQKAQLSLEVTNAEQALVLTKQQSSELEKRINEQVV
PLDNQIAQLTTEQQKANENAARLKQSINALTLKRTEIENASADNKTKLGELETYLREHQS
LSGIAEFISGWSETARHIEHDKKQLETLTQSVNNHRQALSSLDDAIAKTNESLSALTQTF
DDKNAQVAKCEKALQAALSDKPSDTNSANATSKASLQQERDTKLHHWDNVLQIGHIQQQY
LALEQEKVSLGAQKEDLAKKLAQQQSDRQALVDAYKQTRSNLKDIEALIALDAEVAHLRA
QLKSGEPCPVCGANEHTTSSVVIDVPETIQKRDSLKQQLDDIEQQGARAKESVTQTEFTL
AQVNKQLEQASGQRDTLLEKWQQISSVLSADISSFEKVDINTSQSVAQFTQQFKTRLDDI
SAQLTRLEECEQALNAALQAKNEAQQALQAKQSELAVSLQQRETFEKQLTERNTELENKT
KRVNDGILALSETMTAHGADIHNLSIDGIATWLNEKAEALKTYKHNHQLHAKLKDELQGV
SSALLVVSRDIESAENQLKGVCEELLQLDNSLKALRDSRSTVFPEGNIAETRNKASAAQE
HAERNVNECKSRLQQTDTILSRLEAEIAQLNEQMREKEQALSEATEHFSRQLASSPFADE
HAFSNALLDEDARNTLLELQKRLTQQKQQADLKLENALATQQSLKAHTNAALWQSELEEH
GAQWLDTKITQQAQQRDTLLSSLGQIEQQLSANNQARERQQQLVDEMAAFEAYYDDITYL
HSLIGSASGDKFRRFAQGLTLDNLVQLANQQLDKLHGRYQLIRKENEGLGLSVLDTWQGD
VVRDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDVALDALDN
LNASGKMIGVISHIEAMKERIPTQLKVIKRNGVGLSALEKPYAVG
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagaatattgaccttacgccttaaaaatctaaacgccttaaaaggggagtggaagata
gattttacccagtcgccgtttatcgacaatggcctgtttgctatcacgggtccaacaggg
gcaggtaaaaccaccctacttgatgccatttgtttagcgctttatcaccaaacccctcgc
ttggggccaatttcaacgtctaacaacgacatcatgacccgcggcacggcggagtgtttg
gcggaggttgagttcgatattaaagggaaagcataccgtgcgttttggagtatgcgtcgg
gccagagggaaagttgacggtaacctgcaaagtgccgatgttgagctggccgaagttgaa
agcggcaaggtattggctacccaagttaggccgaaaagcgaagagattgaaaagctgact
ggtcttaactttgcccgtttcaccaagtctatgatgttgtcgcaaggggattttgctgcg
tttttaaatgctaacgaggccgaccgagccgagctgcttgaagagttaactggcaccgaa
atttacgggcagatatcacaggcagtacatcagcaatttagtgacgctaaacaaaagaaa
aaagagtttgcgataaagctagaaggcgtaaccttgcttagcgacgagcaaatcacccag
cttgaagaagagcaagcacaaaccaagagccaagtcgcaacgtctaaccaaacacttgtt
cagttacaaaagcaacagcagtggcaacaagcgtttaacgccaatgagctctccattaaa
gaagccagtgaagcgcagcagagcgcgaataacgccatcaatgaggcgaagcatgagctt
gaactcctaacccaaagtgagccagctgaaaagcttcgcctgccatttttgcaaagaaac
gggcttcagcaagacgtaacccgttataaagaaaggcttgaagagaaagcagcccagttg
ccagacttaaaatcgcaaaaggcacagctcagtttggaagtgaccaacgctgaacaagcg
ttagttcttacaaagcaacaaagcagtgagcttgaaaagcgcataaatgagcaggtagtt
ccgctagataaccaaatagcgcagctcactactgaacagcaaaaagcaaacgaaaacgcg
gcacgtttaaagcaatcaataaacgcgttaacgctaaagcgcacagaaatcgaaaacgct
tcggcagataacaagaccaagcttggtgaactggaaacctacttacgtgaacatcaatca
cttagcggcatagcggaatttataagtggctggagtgaaacggcgcgccatattgaacat
gataaaaagcagttagaaacactgacacaaagcgtaaataatcatcgtcaggcgctttca
tccctagatgacgctatcgcaaaaacaaatgagtcgttaagcgcgttaacgcagaccttc
gatgacaaaaacgcgcaagtagccaagtgcgaaaaggcacttcaggccgcgctatctgac
aaaccaagtgatactaatagtgctaatgcaaccagtaaagcaagccttcagcaagagcgt
gataccaagcttcatcattgggataacgtattacagatagggcatattcaacagcaatat
ttggcactagaacaagagaaagtatcgctgggtgcgcaaaaggaagacttagcgaagaaa
ctagctcagcagcaatctgaccgccaagccttggttgatgcttacaagcaaactcgtagt
aatttaaaagacatagaggcgcttattgccttggatgctgaagtggcgcacctgcgcgca
cagttaaaaagtggcgagccatgccctgtctgtggggctaacgaacacaccacgtctagc
gtggttattgatgtacctgaaactatccaaaagcgagatagcttaaagcagcagttagat
gatattgagcagcagggggcgcgggcaaaagaaagtgttacacaaactgaattcactctt
gctcaggttaataagcagctagaacaggcaagcgggcaacgagatacgctgctagaaaag
tggcagcagatttcaagcgtacttagcgctgatatatcgagttttgaaaaggtcgacatt
aatacatcgcaaagcgtcgctcaatttacccagcagtttaaaactcgtctcgatgatatt
agtgctcaattaacgcgtttagaagagtgcgagcaagctctaaatgctgcactgcaggct
aaaaatgaagcgcaacaggcattacaagccaagcagtcagaacttgcagtttctctgcag
cagcgcgaaacctttgaaaagcaacttaccgaacgtaatacagagttggagaacaaaaca
aaaagggttaacgatggtattttagcgctcagcgagactatgacggcgcacggtgctgat
attcacaacctgtctattgatggaattgccacgtggttaaatgaaaaagccgaagcgcta
aaaacttataaacacaatcatcagctacacgccaaacttaaagatgagttgcaaggggta
agtagcgccttgcttgtggtcagtcgtgatatcgaaagcgctgagaatcagcttaagggc
gtatgcgaagagcttctgcagctagataatagcctaaaggcgctgcgagactcgcgctca
accgtattccctgaaggcaatattgctgaaaccagaaataaggcaagcgctgcccaagaa
cacgctgagcgaaatgtaaatgaatgcaaatctcgcctgcaacaaacggacactattttg
tctcgtttagaagcagaaattgcccagcttaatgagcaaatgcgcgaaaaagagcaggca
ctttcagaggcaacagagcactttagccgtcagttggcgagcagcccatttgccgatgag
cacgcgtttagcaatgcccttttagacgaagatgcccgcaacaccttgcttgaactgcaa
aagcgattaactcagcaaaaacaacaagcggacttaaagctagaaaacgcgctagctacc
caacaatcgctaaaagcccatactaacgcagcattgtggcagagcgagttagaagagcac
ggtgcacagtggctcgatacgaaaattacccagcaagctcagcagcgtgacacgctgtta
tcgtctttagggcaaatagaacagcagctaagcgctaacaatcaagcccgcgaaaggcag
cagcagcttgtggatgagatggccgcgtttgaggcctattacgacgatattacttacctg
cactcgttaattggttcggccagcggcgacaaattcagacgttttgctcaagggcttact
ctggacaacttagtgcagcttgcaaatcagcagcttgataaattacacggtcgctatcag
ctaattcgaaaagaaaatgaagggttgggtttaagtgtattagacacctggcaaggtgac
gtagtgcgagataccaaaaccctgtctggcggagaaagtttcttagtgagcctagcgctg
gcattagctttatctgacttggtcagtcacaagaccagtatcgattcgctgtttttagat
gaaggctttggcacccttgatgctgaaactttagatgtggcccttgatgcgctagacaac
ctaaatgccagcggaaaaatgattggtgtgataagccatattgaagccatgaaagagcgt
attcctactcagcttaaagtgattaaacgcaacggtgtggggttaagtgcgctagaaaaa
ccttatgcggtggggtga
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