Alteromonas macleodii Black Sea 11: AMBLS11_07730
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Entry
AMBLS11_07730 CDS
T02260
Name
(GenBank) helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amk
Alteromonas macleodii Black Sea 11
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amk03019
]
AMBLS11_07730
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AMBLS11_07730
Messenger RNA biogenesis [BR:
amk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AMBLS11_07730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
ResIII
NACHT
nSTAND_NTPase5
T2SSE
WHD_HA2
SLFN-g3_helicase
RsgA_GTPase
NTPase_1
Zeta_toxin
SRP54
PhoH
AAA_23
ABC_tran
DUF4028
Motif
Other DBs
NCBI-ProteinID:
AFT78127
LinkDB
All DBs
Position
1827919..1831914
Genome browser
AA seq
1331 aa
AA seq
DB search
MSSPFAIKPLYNKLDDCLSADKFRLKRRITQLAQKVNDTSGVVGKGAEKKAANPKASKRD
IAVSEDSLKAQFEKLEGDIDASIEKRNWRKDNLPKVEYPPLPVSDKKEDIKEAIANNQVV
IVAGETGSGKTTQLPKICLELGRGVNGMIAHTQPRRLAARSVATRIAEELNTPLGEKVGF
KIRFSDQVSERSYVKLMTDGILLAEMQQDRFLNQYDTIIIDEAHERSLNIDFLLGYLRQL
LDKRPDLKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEIRYHAPEDNDDDIDQSDAI
VNAVDELMREAPGDILVFLSGEREIRDTQDALSKQHYRNTEIVPLYARLSAAEQNRIFQS
HSGRRIVLATNVAETSLTVPGIKYVIDPGFARISRYSARSKVQRLPIEPISQASANQRAG
RCGRVSDGICIRLYSEEDYLGRPEFTDPEILRTNLASVILQMLALGLGDIAAFPFVQPPD
NRNINDGFRLLEEIQAIAKSKDNRKTKQSGKMQLTPLGRQVARLPIDPRYARMVIEAERT
NALSEVMVIAAGLSIQDPRERPQEKRQQADEKHSEYHDKDSDFISLYNLWVAFREQQNAL
SQNQLRKWCKQNFINYLRMREWQDIVGQLKKSIAELGFGISKQEADYQAIHQAIASGLLS
HMGFKDKEREYMGSRNSRFLIFPGSGLSKSQPKWVMAAELVETSKLFARMVAKIDPAWVE
PLAEHVVQRSYSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDPPICHELFIREA
LVEGNTKLNYSFLQENQALLEQADEFEQKTRRRDLIVDDEELVSFYAKRIPVEANNDAAF
KKWFKQHGSNDRLTFKEEDVYRQQPGQSVANAFPDVWRQGNITLPLRYNFEPNAEDDGVT
VVIPLPVLNQVDNIGFDWLVPGLRHDLIVGLIKTLPKRLRRNFVPAPNFAEACLADISET
DKNNRPVPLLEAVANKLRKMTGVIIESEEWNLEQLDKHLKMHFAVVNDNGDDIAKGDDLH
ALKQQCAGQVKQTFEKAATPELERNNIEQWDFESLPETFVQKVGGFEVQAFPALVQKGDK
VDIALIEEADKAQVLHKQGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYFNPFGQVKALID
DCIFAGIDAIVSDYCKTNNTDIRSKADFEACLEIARANINDRVLEIAKQVEQGLTLAHQC
QKQMKGNVPLTMINALGDCKAHLASLVFPGFVSEIGESRLDDWNRYIKGLARRLEKLPID
PNKDRMHQVTVEKSIKEWEKACSKYPKGKVPPDLKDVRWMIEELRVSLFAQQLGTAYPIS
AKRITLHLADF
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaccatttgctataaaacctctttacaacaaactagacgattgtttaagcgca
gataagtttcgtttaaagcgacgcattacgcagcttgcacaaaaagtgaatgatacatct
ggtgttgtcggaaaaggcgcggagaaaaaagctgctaatcccaaagcttcaaaacgtgac
attgcggttagcgaagatagcttaaaagcgcagtttgaaaagcttgaaggcgacatcgat
gcatcaatagaaaaacgcaattggcgtaaagacaaccttcctaaagttgaatacccaccg
ctgccggttagcgataaaaaagaagacattaaagaagcgattgcaaataaccaagtggtg
attgttgcgggtgagaccgggtcgggtaaaactacgcagctacctaagatatgcttagag
ttaggtcgcggtgtaaatggcatgatagcccacacccagccaagacgattagcggcgcga
agtgtagctacccgtatagctgaagagctaaacacgccgcttggcgaaaaggtgggtttt
aaaattcgctttagcgatcaggtaagcgagcgaagctacgttaagcttatgaccgacggt
attctgctagctgaaatgcagcaagaccgctttttaaatcaatacgatactatcatcatc
gatgaagctcacgaacgcagccttaatatcgacttcttgttgggctatctgcgtcagctg
ttagacaagcgccctgatttaaaactcattatcacctctgccaccatcgacccagagcga
ttctctaagcattttaacaatgcgcctattatcgaagtgagcggacgtacctatccggta
gaaattcgctaccacgcgccggaagataatgatgacgatattgatcaaagcgacgccatc
gtaaacgctgtcgacgagctaatgcgtgaagcaccgggagacatcttagtgttcttaagc
ggggagcgcgagatacgcgacacccaagatgccttgagcaaacagcattatcgcaacact
gaaattgttccgctgtatgcgaggttgtcggcggcagagcaaaaccgcatatttcagtcg
cacagcggcagacgcattgtacttgccaccaacgtggcagagacctcgcttacggtgcct
ggcattaaatacgtaattgacccgggttttgcccgtatttcacgctacagcgccagaagt
aaagtgcagcgtttacctattgagccaatatctcaggcgtcagcgaatcagcgggcaggg
cgatgcggccgtgtgtctgacggtatttgtattcgtctttatagtgaagaagactattta
ggccgcccagaatttactgacccagagatcctgcgaaccaacttagcgtcggttattttg
caaatgcttgctttagggttaggcgatatcgctgcttttccatttgttcagccgccggat
aaccgcaatatcaacgacggtttccgtttacttgaagaaattcaagctatcgcgaaaagc
aaagataaccgaaaaaccaagcaaagcggcaaaatgcagcttactccgctaggtcgtcaa
gtagcacgtttacctatcgaccctcgctatgctcgtatggtgattgaagccgagcgtact
aatgcgcttagcgaagtcatggtgattgcagcgggactttcaattcaggatccgcgtgag
cgtccacaggaaaaacgccagcaagcagacgagaagcacagcgaataccacgataaagat
tctgactttatcagtctttacaacttgtgggtggcgtttagagagcaacaaaacgcactc
agccaaaaccaattgcgcaaatggtgtaagcaaaatttcatcaactatttacgtatgcgt
gagtggcaggacattgttggccaacttaaaaagtctatcgctgagctgggctttggcatt
tcaaagcaagaagccgactatcaggctattcaccaagccatcgccagcggcttgctgtct
cacatgggctttaaagataaagagcgcgagtatatgggctcgcgtaattcgcgctttctt
attttccctggttcagggctatcaaagtctcagcccaaatgggtaatggcagctgagctt
gtagaaacctctaagctatttgctcgtatggtggcaaaaattgacccagcatgggtagag
cctttggccgagcatgttgtgcaaagaagctattcagagccacactggtctaaaaagcgc
ggtgcggtgattgcctttgaaaaagtaaccttgttcgggctacccatcgtaatgaagcgt
gcgaaggtttatagccttatcgacccgccaatttgccacgagctatttatccgcgaagcg
ttagtagagggcaatactaagctcaattacagtttcttacaggaaaatcaggcactgctt
gagcaggcagacgaatttgaacaaaagacccgtcgtcgcgatttgatagtcgatgatgaa
gagcttgtaagcttttacgcgaagcgcattccggttgaggccaataatgatgcggcgttt
aagaagtggtttaagcaacacggcagcaacgacaggttaacgtttaaagaagaggacgtg
tatcgtcagcagcctgggcagtcggtagcaaacgcgtttcccgatgtatggcgccaaggc
aatattacgctgccgcttcgctataacttcgaacctaacgctgaagatgatggcgtaact
gttgtcatcccgctgcctgtgcttaaccaagtcgacaatataggttttgattggctggtg
cctgggctaaggcacgacctcattgtgggtttaattaaaaccttgcctaaacgcttgcgt
cgcaactttgtgcctgcgccaaactttgcggaagcatgccttgctgatatcagtgaaacg
gataaaaacaaccgcccagtgcctttgcttgaagccgtagccaataagctacgcaaaatg
acgggcgttattattgagagcgaagagtggaatctagaacagcttgataagcatttaaaa
atgcactttgcggtagttaacgacaacggtgatgatattgctaaaggtgacgaccttcac
gcgcttaaacagcagtgtgcagggcaggtgaaacaaacctttgagaaagccgcaacaccc
gaattagagcgcaataacatcgaacaatgggatttcgaaagtttgccggaaacctttgtg
cagaaagttggcgggtttgaagttcaggcgttcccggctctggtgcaaaagggtgataag
gtagatattgcgttaattgaagaagcggataaggcccaagtgctgcacaagcaaggcgtg
aatgtcttgattaaaaacgcgatgccgtcgccgcttaattatttgcaaagcaaattacct
aacaaagccaagctgggtttgtatttcaatccatttggccaagtgaaagcgctaattgat
gattgtatttttgcgggtattgatgcgattgtcagtgattactgcaaaaccaataacacc
gacattcgcagcaaggccgattttgaagcctgtttagagattgctcgtgcaaacattaat
gacagggtgttagaaattgccaaacaagtggagcaggggcttacccttgcgcatcaatgt
cagaagcaaatgaaagggaatgtgccgctgaccatgataaacgccttaggcgactgtaaa
gcccacttggcatcgttagtttttcctggttttgtttctgaaattggcgagagtaggtta
gatgattggaaccgttatattaaaggtttagctcgtcggctagagaagctccccatcgac
cctaacaaagacagaatgcatcaggtaacggtagaaaagtcgattaaagaatgggaaaag
gcgtgcagcaaatatcccaaaggtaaagtgccgccggacctcaaagacgtgcgctggatg
atagaagaattgcgggtttccttgtttgcccagcaacttggtaccgcatatcccatttcg
gctaagcgtattactttgcacctcgctgatttttag
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