Alteromonas macleodii Black Sea 11: AMBLS11_08635
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Entry
AMBLS11_08635 CDS
T02260
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBLS11_08635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amk03019
]
AMBLS11_08635
03016 Transfer RNA biogenesis [BR:
amk03016
]
AMBLS11_08635
Enzymes [BR:
amk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AMBLS11_08635
Messenger RNA biogenesis [BR:
amk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMBLS11_08635
Transfer RNA biogenesis [BR:
amk03016
]
Prokaryotic type
tRNA degradation factors
AMBLS11_08635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFT78308
LinkDB
All DBs
Position
2047675..2049849
Genome browser
AA seq
724 aa
AA seq
DB search
MAILCAAFKSDKIKIEIKGQIVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSV
LVTVVGKKEAKADQDFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIR
PLFPEGFKNEVQVVVTVMSANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYSNGE
YILNTRAEEQAESELDLVVAGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVN
EFAAEVGTEKWDWTPEAENTALKDKVKALAEAEMTAAYQISDKLERKDAVTAATEKALAA
IIAENETQDQKEVLDLLHELESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGS
ALFTRGETQALVAATLGTERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRRE
IGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAS
VAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQ
IALKQAKEARLHILKVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQIT
EESDTNIEIEDDGTIKIFATERAKADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVE
VLPGKEGLVHISQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSIKELLEKPAPKS
DDAE
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggctatactatgcgccgcgtttaaaagcgataaaataaagattgaaattaaaggacaa
atagtgactcctattactaaatcatttcagtatggacagcatactgtaactctagagacg
ggtgtaattgctcgtcaggcaacagctgcggttcttgcgagcatggacgacacgtctgta
ctggtaacagtagttggtaaaaaagaagccaaagcagatcaagacttcttcccacttact
gttaactaccaagaaaaagcgtatgctgcgggtaaaatcccaggtggtttcttcaagcgt
gaaggccgtccatctgaaggtgaaacactgattgcacgtcttatcgaccgtccaatccgc
ccattattcccagaaggtttcaaaaacgaagtacaagttgttgttactgtaatgtctgct
aacccagatatccctacagacatcatctctatgattggtacttcagcagcccttgctatc
tctggtattcctttcaacggcccaattggtgcggctcgtgttggttatagcaacggtgaa
tacattctaaatacacgcgcagaagagcaagctgaaagcgagcttgaccttgttgttgcg
ggtactgaaggcgcagtacttatggttgaatcagaagcaagcgtgctttctgaagacacc
atgctaggtgcggttatgttcggtcacgagcaaatgcaaactgtagttaacgcagttaac
gaatttgcagctgaagttggcactgagaagtgggactggacaccagaagcagaaaacact
gcgcttaaagacaaagttaaagcactagctgaagcagaaatgactgcggcttaccagatt
tctgacaagttagagcgtaaagacgcggtaactgcagcaactgaaaaagcgcttgcagcc
attattgctgaaaacgaaacgcaagatcagaaagaagtactagaccttcttcacgaactt
gagtctgacgttgtgcgttcacgcattctatctggcgcgccgcgtatcgatggtcgtgac
ccagcaatgatccgtgcactagacgtagcgacaggtattcttcctcgtactcacggttct
gcactatttactcgtggtgaaactcaggcccttgtagctgctacgcttggtacagagcgt
gacgcacagatgattgacgagcttcaaggtaagcgcgacagccgtttcatgcttcactac
aacttccctccatactgtgttggtgaaaccggtatgattggttcgcctaagcgtcgtgaa
attggtcacggtcgtctagcgaagcgtggtattcaagcagtaatgccaagtgaagaagaa
ttcccgtacgtagtacgtgtggtttctgaaatcacagaatcaaacggttcatcttcaatg
gcgtctgtatgcggtacttcactagcgcttatggatgcaggtgttccaattaaagcgtct
gttgcgggtatcgcaatgggcctagttaagagtgacgacaactttgttgtactttcagac
atccttggtgacgaagatcaccttggcgacatggactttaaagtagcgggtactaccgaa
ggtattactgcacttcaaatggacattaagattgaaggtattactaaagaaatcatgcaa
attgcgcttaaacaagcaaaagaagcacgtttgcacattcttaaagtaatggacgaagcg
attggcggtcaccgtgaagaactaagtgaatttgctccacgcatttacacaatgaagatt
gaccaagacaagattcgtgacgttatcggtaaaggcggcgcaatgatccgtcaaattact
gaagagtctgacactaacatcgagattgaagacgacggtactatcaaaatcttcgcgaca
gagcgtgcgaaagcagacatcgctattagcaagattgagcaagtaacggctgaaattgaa
gttggtaagacttacaatggtaagattacacgtattgtagacttcggtgcgttcgtagaa
gtacttccaggtaaagaaggtcttgttcacatttcacaaatcgctcacgagcgtgtgaac
aaagtaactgactacctagaagaaggccaaatggttgacgttaaggttatggaaatcgat
cgccaaaaccgtgtacgtttaagcattaaagagcttctagaaaagcctgcgcctaagtct
gacgacgcagagtaa
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