Alteromonas macleodii Black Sea 11: AMBLS11_11720
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Entry
AMBLS11_11720 CDS
T02260
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amk
Alteromonas macleodii Black Sea 11
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amk03016
]
AMBLS11_11720
Enzymes [BR:
amk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AMBLS11_11720
Transfer RNA biogenesis [BR:
amk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AMBLS11_11720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AFT78917
LinkDB
All DBs
Position
complement(2760389..2761546)
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AA seq
385 aa
AA seq
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MQYQLITTSEQLEKVCTAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI
DNMQPFIDLMENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPSLGYAK
LVELLCDISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIY
QEIALLVDKKRAQMPEDFAYLSIKNNWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK
EGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEARAKYAQTPEKLRLPVVL
RLIDIAKYKKTLAELKAISDQIAKDNAVNSDVIASKKQLNQLLKWYWFSVDETRVQGLMP
DVLSTWREPLFRSHVTRLLGDAPAQ
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatcaattaattacaacatctgaacaactcgaaaaagtgtgcactgccgcacag
cgtcaagaggcggtagctttagacaccgaattcgtaagaacgaaaacccttactccgcat
ctaggcctaatacagctttacgatggccatcagctggtactcattgacccgcttgccata
gacaatatgcagccgtttatcgacctcatggaaaataccgaagtagtgaaagtattgcac
tcgtgttctgaagacattgaggcttttcttactgcctttgataccgttccaacgcctgtg
ttcgacacgcagcttgcgggaagtattttggacatggggccgtcacttggctatgcaaag
cttgtagagttgctgtgtgatatcagtttggacaaaggggagtcgcgaaccgattggtta
gccagacctctacgtgaagcgcagctgagctacgcagcgaatgatgtgctgtatttactg
ccttgctaccaacagttagccagtaaagtacaagaggcggggaaagtgcactggatttat
caagagatcgctttgctagttgataagaagcgcgctcaaatgcctgaagattttgcgtac
ttaagtattaagaataactggcgattaaacagcgaacagctcactgtattacaggcacta
gcggcatggcgtttaaataccgcgcgcaaaaaagatctggctctaaactttgtgtttaaa
gaagggcatttgtttgaagcggcgcagcggcttatagatagtaaatctggcctttcgcgt
attaacggcgtgaatcatcagtcggtacgccgctacggcgacaccatcatcacgctaatt
gaagaggcaagagcaaagtacgcgcaaacgccagaaaagctcagacttccggttgtgctg
cggttaattgatatcgccaagtacaaaaaaacgctggccgagcttaaagctatcagcgac
cagatagcgaaagacaatgctgtaaatagtgacgttattgcctctaaaaaacagctgaat
caactgttaaaatggtactggttttcggttgatgaaacccgcgtgcagggactaatgccc
gatgtactgtcgacgtggagagagccattgtttcgctctcacgtaacccgtttacttggc
gacgctccggcccaatag
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