Alteromonas macleodii Black Sea 11: AMBLS11_13655
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Entry
AMBLS11_13655 CDS
T02260
Name
(GenBank) RecQ domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBLS11_13655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amk03019
]
AMBLS11_13655
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_13655
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBLS11_13655
Messenger RNA biogenesis [BR:
amk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBLS11_13655
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMBLS11_13655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
TniB
AAA_22
Epimerase
HEM4
Motif
Other DBs
NCBI-ProteinID:
AFT79300
LinkDB
All DBs
Position
3195381..3197372
Genome browser
AA seq
663 aa
AA seq
DB search
MYSDPNILQRLFGFSAFREGQKEVVESLLGGHSTLAIFPTGSGKSLCYQFVATQLPHLTL
VVSPLLALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMSDVRSGQCKILMVSVERFKNE
RFRQFIESVQVSMLVVDEAHCISEWGHNFRPDYLKLPAYQKELNIPLVLLLTATATKKVK
EDMAARFDIAPANIIQTGFYRPNLNLHVRPVHEPYKNQALLEEIQKQQGAGIVYVTLQNS
AEEVARFLQQQGFAAKAYHAGLDNEVRQSIQQDFMSNKLQVVVATIAFGMGIDKSDIRFV
IHYDLPKSIENYSQEIGRGGRDGKAANCTVLANLDGLVTIENFVYGDTPDKSAIQRVIDD
IKSQAPAHINSAAQSSSTANGENGIYQWETQINSLSSASNIRQLPLKTLLVQLELADVIR
PLYAYFAEYKFRFISEKATILGLFSEERARFLDAVFTHSNMKKVWGIVDFDSIYQHYGAE
RARVVAALEYLHEHNHIELASRLITDVYRVDYEKLQAADLAEKLARYFAENERKEVERIA
ALVSFFELNTCLSYNLSAYFDDTQVPKECGHCSVCEGNVAKLSYSTPIPKPNFDQVSQAM
TALKTHLNGKFEGPITASIYCRFLTGMTMPLFTRLKIRQVKGFGICENCRYADVKAAVDT
INQ
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtactctgaccccaatattttgcagcggttgtttggtttttcggcgtttcgtgagggc
cagaaagaggtcgtagaatcgctgcttggtggacattcaacactagcgatttttcctact
ggttcaggcaaatcactgtgctatcagtttgttgctacacagttgccgcatttgaccttg
gttgtgtcgccgctattggcgctgatgaaagatcagctggagtttttacatagtaaaggc
attgcggcggccagtatcgactccacactaacgcccgagcaaaacaagcaagtgatgagc
gacgtacgctcgggccagtgtaaaattctgatggtatcggtagaacgctttaagaacgaa
cgctttagacagttcattgaatctgttcaggtaagtatgttggtagttgatgaagcacac
tgtatctctgagtggggccacaacttccgcccagactatttaaagctcccggcgtatcaa
aaagagctaaatattcctttggtgctgcttctcactgctactgccactaaaaaagtaaaa
gaagatatggcagcgcgctttgatattgcgccagccaatattattcaaacagggttttat
cgacccaacttgaatttgcatgttcgccctgtacatgaaccatataaaaaccaagcctta
cttgaagaaattcaaaaacagcaaggcgcgggtattgtttatgtcacgcttcaaaatagc
gcagaagaagtagcccggttcttacagcaacaagggtttgctgcaaaggcctatcacgct
ggcctcgacaatgaagtaagacaaagtatccaacaagattttatgagcaataagcttcaa
gttgttgtggctactatcgcctttgggatgggcattgataagtcggatattcgctttgtc
attcactatgatttgccgaagtctattgaaaactacagccaagaaattggccggggtgga
cgagacggtaaagcggcaaactgcacggtattagcaaaccttgatgggttagtcaccata
gaaaacttcgtttatggcgacacaccagataaaagcgccatacaacgcgtaattgacgat
attaagtcacaagcccctgctcatataaattcagcagcgcaaagtagttcaacggctaat
ggcgaaaacggtatttaccagtgggagacgcaaataaatagcttatcgagtgctagcaat
atccgacagcttccacttaaaaccctactcgtgcagctagagctcgccgacgttatacgc
ccgttatatgcctattttgctgaatacaaatttcgctttatttcagagaaagccaccata
ctcggccttttctcagaagaacgtgctcgctttttggatgccgtattcacacactcaaac
atgaaaaaggtgtggggcattgttgatttcgacagtatttaccagcattacggcgcagag
cgcgcaagagtagtagcagcgttagagtatttacatgaacacaatcatattgagcttgcc
tcgcgcttgattactgacgtataccgcgttgactacgagaaactgcaagctgccgatttg
gcagaaaagttggctcgctatttcgctgaaaacgagcgaaaagaagttgagcgcattgcc
gcgctggtaagcttcttcgaacttaatacctgtttaagctacaacctatcagcgtatttt
gatgatactcaagtgccaaaggaatgtgggcactgtagcgtttgtgaaggaaacgtggct
aagcttagctattcaactccaattcctaaaccaaattttgatcaagtatctcaagccatg
acggctctcaaaacccatttaaacggtaaatttgaaggccctattactgcgtctatttat
tgccgctttctaaccggtatgactatgccgttgttcactcgcttaaaaataaggcaggtc
aaagggtttggtatatgcgaaaactgccgatatgctgatgtgaaggctgccgtagacacg
ataaatcagtga
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