Alteromonas macleodii Black Sea 11: AMBLS11_15420
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Entry
AMBLS11_15420 CDS
T02260
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBLS11_15420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amk03019
]
AMBLS11_15420
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMBLS11_15420
Messenger RNA biogenesis [BR:
amk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBLS11_15420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFT79653
LinkDB
All DBs
Position
complement(3622650..3624101)
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AA seq
483 aa
AA seq
DB search
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL
QRLMSGQPVSGNNVRALILTPTRELAAQVEESISAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ
SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVEQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLSRSKIPSAAIHGNKSQGARTKALADFKSGAIKVLVAT
DIAARGIDISELPIVVNLDLPNTPADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET
LIQKLLPRETLEGFEPQQAVPATTLSKPKKPKKPKKPKAPQGEDLSEGKRSGDNKKAGQR
QGNRGGNGNSRTGKPNARNNNGGKPAGQRRSGSEGNAARRPAKRRSNPSNGTPGNKVSNN
AKA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccaattagggctcgctgaacccttgttaaaagctattgaaaaacgagga
tttagcacaccatcacctatccaagaaaaggcgataccagaagtattgcagggaaaggat
gtgttggcagctgcgcaaacgggaacagggaaaactgcgggatttggacttcctatttta
cagagactgatgtcaggacaacctgtgtctggcaataatgttcgagcacttatcttaacg
cccacgcgtgagcttgctgctcaggtagaagaaagcattagcgcgttcagtgagtttttg
ccgttaaaaaccgctgtcgtttttggtggagtgggcattaaccctcaaatgatgaagctt
cgtaaaggggttgatgtgttaattgctacacctggtcgattactcgatctgtaccagcaa
aacgcagttaagttttctcagcttgaagtgttggtattggatgaagccgacagaatgcta
gatatgggctttattcacgacattaaaagagtactgaaactattgccacaagagcgtcaa
agcttacttttctcagccacattttctgatgaaatcactgcgctggcgaaaactataacg
cgcaaccctgtgagtatttcaaccgcgcctgccaataccacggtagaagctgttgagcag
catttggtaactatagataaatctaaaaagacaactgcgcttatttgcctgatcaaacag
caaaagtgggagcaggtgttagtatttagccgtactaaacatggcgctaaccgtattgca
gaaaaattaagccgctcaaaaattccaagtgccgctattcacggtaataaaagtcaggga
gcgagaaccaaagcccttgctgattttaaaagtggcgctattaaagtattggtggcaacg
gatattgctgcacgcggcatcgacatcagtgaactccccattgttgttaacttagactta
cctaatacaccggccgattatgttcacagaattggtcgtacaggccgtgccggcgctagc
ggacaggcttggtcatttgtgtgtgccgaagagctacagaacctgaaagatattgaaacg
cttattcaaaagctgcttccgcgtgaaacgttggaaggttttgagccacagcaggccgtg
cctgctaccacgctgtctaagccgaaaaaacctaaaaagcccaaaaagccaaaagcacca
caaggtgaggaccttagcgaaggcaaacgaagtggcgataataagaaagcgggtcaacgc
caaggcaatcgtggcggaaatgggaactcgcgtaccggtaaaccgaatgcgcgtaacaat
aatggtggaaagcctgcaggtcaaagacgttcaggtagcgaaggtaatgccgctagacga
ccagctaaacgcagaagcaacccttctaatggcacgcctggtaacaaggtctcaaacaac
gcaaaagcttaa
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