Alteromonas macleodii Black Sea 11: AMBLS11_16340
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Entry
AMBLS11_16340 CDS
T02260
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMBLS11_16340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amk03021
]
AMBLS11_16340
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_16340
Enzymes [BR:
amk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMBLS11_16340
Transcription machinery [BR:
amk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMBLS11_16340
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMBLS11_16340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AFT79837
LinkDB
All DBs
Position
complement(3864724..3865710)
Genome browser
AA seq
328 aa
AA seq
DB search
MGSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI
DGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVVAGDIQHDGDV
EITNPDHVICTLTGEAEISMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVER
IAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPEA
KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASRGLSLGMRLENWPPESIAEKD
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
gtgggttctgtgactgaattcctaaaaccgagattagttgagatcgaaaacgtttctcct
actcgtgccaaagtaactttggaaccactagagcgcggctttggccatactctaggtaac
gccctacgtcgtattttactgtcatctatgccaggatgtgcagttaccgaggtagaaatt
gacggcgttcttcacgagtacagcaccaaagaaggtgttcaggaagacgtaattgaaatc
ttgctaaatcttaaaggtttagcggttcgccttgaaggtaaaactgaggcaaccctaact
ctagtgaaatctggcgctggccctgttgttgctggtgatattcagcatgatggcgacgta
gaaattacaaaccctgaccacgttatttgtactttaactggcgaagctgaaatcagcatg
cgcattaaagtagaaatgggtcgcggttatgtaccagcttctacccgtcgctcctctgaa
gaagatgatcgtccaattggtcgtttgttagtagacgcttcatacagcccagttgaacgt
attgcttacagtgtagagtctgctcgtgttgaacaacgcacagacctagacaaactaatc
atcgacatggagacgaacggtactttggatcctgaagaagcgatccgccgttctgctact
atcctagctgaacagctagatgcattcgtagacttacgtgatgtgtctgagccagaagcg
aaagaagagaagccagaatttgatccgattctgcttcgtccagtagatgacctagagctg
acagtacgttctgcaaactgtttgaaagcagaagctatccagtacattggtgacctggta
cagcgcactgaggttgagctacttaaaacgccaaaccttggtaagaaatcgctaactgaa
atcaaagatgttctagcatctcgtggtctttctctaggtatgcgcctagaaaactggccg
ccagagagcatcgctgaaaaagattaa
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