Alteromonas macleodii Black Sea 11: AMBLS11_17025
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Entry
AMBLS11_17025 CDS
T02260
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMBLS11_17025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amk03021
]
AMBLS11_17025
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_17025
Enzymes [BR:
amk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMBLS11_17025
Transcription machinery [BR:
amk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMBLS11_17025
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMBLS11_17025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFT79972
LinkDB
All DBs
Position
complement(4011050..4015222)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFEAKM
GAEAVFDLLTALDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKDIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQSSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTNEVLVERNVLLDEALVDMLEANSVDQIMVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITHPGDTQFL
EGEQVEVSNVKVANREIEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAAEAEQALTEAL
NAGADEDTAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagactgaagaattcgataatatt
cgaatcggtctgtcttcacctgacatgatccgttcatggtcattcggtgaagttaaaaag
cctgaaacaattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atctttggtccggtaaaagactacgagtgtctttgcggtaagtacaagcgccttaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacactgactaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggttgcacacatctggttccttaaatcactt
ccgtctcgtatcggcctaatgcttgatatgacacttcgtgatattgaacgtgtactttac
tttgaatcatatgtggttacagagccaggtatgactacgcttgagcgcagccaacttctt
aacgaagaagagtacttggatgcacttgaagagcacggtgatgagtttgaagcgaagatg
ggtgctgaggcagtattcgatcttcttacagcactagacgtagacgcagatgttgcggct
atgcgtgaagagctgccttcaatcaactctgaaactaagcgtaaaaagattactaagcgt
cttaagttgcttgagtcattccaacagtctggtaacaagccagagtggatgatcatgacg
gttcttccggtacttccaccagatctacgtcctctagtaccactagatggcggccgtttt
gcaacgtctgaccttaacgacctataccgtcgtgtaattaaccgtaacaaccgtcttaag
cgtcttctagacttagctgctccagacattatcgtacgcaacgaaaagcgtatgcttcaa
gagtctgttgatgcgcttctagataacggacgtcgtggtcgtgcgattaccggttctaac
aagcgtccacttaagtcgcttgcagacatgattaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggccgttctgtaattaccgttggtcctacg
ctacgtcttcaccagtgtggtcttcctaagaagatggcacttgagctatttaaaccgttt
atctacggtaagcttgaagcacgtggtcttgcgacaacaatcaaagcagctaagaagctt
gtagagcgcgaagcaccagaggtttgggacgtactagacgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcgttcgaaccaaca
ctaattgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtacaacgccgac
ttcgacggtgaccaaatggcggtacacgtcccgttgacaatcgaagcacagctagaagct
cgtgcgctaatgatgtcaacgaacaacattctgtcacctgcgaatggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttactacctgacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtatttaccagcccgaatgaagcagaaaaagcataccgcacaggt
aatgctgagcttcactcacgcgttaaagtacgtattactgaatatgacatcgatgaagat
ggcaacaaaactgagaaagtaacgctaactgacactactgttggtcgtgcgattttctca
ttgatccttcctaagggtctgccgtttgaaatcatcaaccaagcgatgggcaagaagcaa
atttcaagactattgaatgcttgttaccgtacgctaggtctgaaagacacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcgtctgttggt
atcgacgatatggttatccctgctgctaagaaagacatcatcgatgcagcggaagcagaa
gttattgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgctaacgaaaaagttgctaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcaatcatcatttaac
tctgtttacatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagcta
gctggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctcaactcacggtgctcgt
aaaggtcttgcggataccgcacttaagacagctaactcgggttacctaacgcgtcgtcta
gtagacgttgcacaagacttggtaatcactaacgacgactgtggcacattcgaaggtgtt
caaatgacaccactaatcgaaggtggtgacgttgttgagccactacgcgagcgtgtacta
ggtcgtgtagtagcagaagatgtacttaagccaggtactaacgaagtactagtagagcgt
aacgttcttctagacgaagcgttagtagacatgcttgaagctaactcagttgaccaaatc
atggttcgctcggtaatcacttgtgacaacgacttcggtgtttgtgctaagtgttacggt
cgtgaccttgcacgtggtcacatggtgggtagcggtgaatcggttggtgttattgcagca
cagtcaatcggtgagccaggtacacagcttaccatgcgtacattccacatcggtggtgcg
gcatcaagagcgtctgctgagaacagcgtacaagttaagactgcgggtagccttaagcta
cacaatgctaaattcgtacgtaactctgacggcaaagtggttatcgtttctcgttcaaca
gaacttactgttatcgacgagcaaggccgtgagaaagagcgctataaagtaccttacggt
gctgtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcattactgaacgtgcagctaagattagcttcgcagacatt
gatgactctaacaccgaaatgcagcaagacgagcttactggtctaacccgtatcgttgtt
aaagaccttgcgaaagtaaactctaaagagcctaagctaattcttgaaagcgacgagttt
ggtcttcaagaaattcgtcttccaagcttcacaaccatcgaagcgaaagaaggcaaagtg
gctaacgaaggtgacgtgctagcacgtattcctcaggaaagctcgaagactcgtgatatc
acgggtggtctaccgcgcgttgcggacctatttgaagcacgtaagcctaaagagcctgca
atccttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtaattacacctgctgagggtgacgcatacgaagagatgattcctaagtggcgtcag
cttaacgtattcgaaggtgagaaagtggaaaaaggcgaagttatcgccgatggtccagag
tctccccacgatatcctacgtctacgtggtatctcagcagtagcaaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgttaagattaacgataagcacattgaagta
gttattcgtcagatgctacgtaagtgtattatcacgcacccaggcgatacgcagttcctt
gaaggcgaacaggttgaagtatcgaacgttaaagtggctaaccgtgaaattgaaaaacac
ggcaagatcccagcgcagtacgaaacacagctgcttggtatcactaaagcgtcactgtct
actgagtcatttatctcagcggcatcgttccaggaaacaacacgtgttctaaccgaagct
gcggttcaaggtaaagaagatgacctacgcggtctgaaagaaaacgtaatcgttggtcga
ctaattccagcgggtacaggtttcgcttaccacgaacgccgtgcacaacgccgtaaagag
caaatcgaagaaatgtcagtttctgctgctgaagcagaacaggcactaaccgaagcgctt
aacgctggtgcagacgaagatactgccgaataa
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integrated database retrieval system
