KEGG   Alteromonas macleodii Black Sea 11: AMBLS11_17165
Entry
AMBLS11_17165     CDS       T02260                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
amk  Alteromonas macleodii Black Sea 11
Brite
KEGG Orthology (KO) [BR:amk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amk03400]
    AMBLS11_17165
Enzymes [BR:amk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AMBLS11_17165
    5.6.2.6  RNA 3'-5' helicase
     AMBLS11_17165
DNA repair and recombination proteins [BR:amk03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    AMBLS11_17165
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 SNF2-rel_dom
Other DBs
NCBI-ProteinID: AFT80000
LinkDB
Position
complement(4045623..4048175)
AA seq 850 aa
MNPLPSVFSRWFEQKGWQLRDYQHTMLVEKDQHNCTLLIAPTGAGKTLSGFLPSLIELAE
MSEGDELAETSEISEHAETKERIKQAKKVKEKGGFNGLHTLYISPLKALTQDIHRNLLQP
IEEMALQITAETRTGDTPSHKRQRQRKKPPNILLTTPESLMLMLSYADADKLFGKLKRVI
IDETHSLMANKRGDFLSLALARLSVLSPHCKRIGLSATVAFPETLGAWLAGSDGVANIVK
VKAGEKPKVEMLHSKARMPFGGFMARYAIDDIYQAIENAKTTLVFVNTRAQSELLFQMLW
EANKAALPIALYHGSLSKEQRRKTEAMMASGMLRAIVCTSALELGIDWGDVDKVIQVGAP
KGVSRLLQRIGRANHRLDEPSEALLVPANRFEALECQAAIIAIEKGELDGESPQPGALDI
VPQFILNCLCSRADSPDTLYQEILTATPYQGLDRDDFDKLWQFTQDGGSALNAYERYQRL
TQNDDGTYSPANRRVIQRHRQNIGTIVEAGRLKVKRIRRGNQGKIIGEVEEYFAQQLTPG
DTFYFAGEVLRFEAIRDMQLHAKPAKAKEPKIPSYAGGQMPLSTYLAEGVRAILASQKSW
RALPAQVQEWLKLQQAFSQLPSPDNVLVEQFPFRQAYYTLYYTFDGRKANQTLGMLLTRR
MEKMGIKPLSFSVTDYGLSVASVNAITQGQLQQLFQPDILGDELEDWMLQAPMLKRSFRQ
VAVVSGLTEQRYHASQKTMKQVTFSTDLIYDTLREHDRDHILLKVARADAERELLDLRRL
ANLLIRYVDSVTLVNLEKPSPMAIPIVLDVRSEQVKGAGAQAIIEQANLYAEAETMLDEV
RALLSGASVE
NT seq 2553 nt   +upstreamnt  +downstreamnt
atgaacccacttccctcagtcttttcccgttggtttgaacaaaaaggctggcagttacgc
gattatcaacacaccatgctggtggaaaaagaccagcataattgcacgttgttgattgca
ccaaccggcgctggcaaaactctgtctggctttttacctagtctaatcgaactagcagag
atgtcggaaggagatgagctcgctgagacgtctgagattagcgaacatgctgaaacaaag
gaaagaatcaaacaggcaaagaaagtaaaagaaaagggcggatttaacgggctgcatact
ctttacatttcgccattaaaggcccttacgcaagatattcatcgtaatttgttacagccc
attgaagagatggcgctgcagataacggcagaaacacgtactggcgacacgccttctcat
aagcgccagcgtcaacgtaaaaagccgccaaacatactacttaccacacctgaatcgctc
atgctgatgttgagctacgccgatgccgataagctttttggcaagcttaaacgcgtgatc
atcgatgaaacgcacagtttaatggccaataagcgcggcgactttctttcactcgccctt
gcgcggttaagcgttctatcaccgcattgtaagcgtattggcttatcagccactgtggca
tttcccgaaacgctgggggcgtggctggcgggcagtgacggtgtagctaatattgtaaaa
gtgaaagccggtgaaaaacctaaagtcgaaatgctgcattctaaagcgcgcatgcccttt
ggcggctttatggctcgctacgccatcgatgatatttatcaggctattgaaaacgccaaa
accacgctggtttttgtgaatacgcgagctcagtcagagctgttgtttcaaatgttgtgg
gaggcaaacaaggctgcgcttcctattgccctttatcacggcagcttgagcaaagagcag
cgtcgtaagaccgaagccatgatggcaagcggcatgctgcgggcaattgtatgtacgtcg
gccttggagttaggtattgactggggggacgtggataaggttattcaagttggcgcacca
aaaggcgtgagccgattactgcagcgcatagggcgggcaaaccacaggctcgacgagcca
agtgaagcgttgctcgtacctgcaaaccgttttgaagcgctggaatgccaggcggcgatc
atcgctattgaaaaaggcgagctagacggagagagcccacagccaggggcgctggatatt
gtcccgcaatttatactgaactgcttgtgtagtagggctgatagcccagatacattgtat
caagagatacttaccgccaccccatatcaggggttggatagagatgatttcgataagctg
tggcagtttacccaagacggcggcagtgcgctcaatgcatatgaaagatatcaacgcctg
acacaaaacgacgatggcacttactcgccagcgaatcggcgggttattcaacggcacaga
caaaatatcggcaccatcgttgaagcgggtcggcttaaagtaaagcgtattcgaagagga
aaccaaggcaagattattggtgaagtagaagagtattttgctcagcagctaacgcccgga
gacaccttctactttgcaggagaagtattgcgttttgaggctattcgcgacatgcaacta
cacgctaagcctgcaaaagcgaaagagccgaaaataccaagctacgcaggtggccaaatg
cccctttctacctatctagcggaaggtgtaagggcaattttggcttctcagaaatcgtgg
agagcactgcctgcacaggtacaagagtggcttaaacttcaacaggcgttttctcaattg
cctagccctgacaacgtgctagtggagcaatttccgtttagacaggcttactatactttg
tactacaccttcgacggacgcaaagcgaaccaaaccttgggtatgttgttaactcgacga
atggaaaaaatgggcattaagcctttaagcttcagcgtgaccgattacggattatcggtg
gcttcagtaaacgccatcacacaagggcagctccagcagctatttcaaccggatattcta
ggggacgagctagaagactggatgctacaggcgcctatgcttaagcgttcgttcaggcag
gtggcggtggtgagtggactgacagaacagcgctatcacgccagccaaaaaaccatgaag
caagtcacattctctacggatcttatttacgatacgttgcgtgaacacgaccgcgaccat
atcttacttaaagtagcgcgggccgatgctgaacgtgagctacttgatttaaggcgactt
gctaatttacttattcgctacgtggattcagtgacactggtaaaccttgaaaaaccgtcg
cccatggccattcctatagtactggatgtgcgcagtgagcaagtgaaaggcgctggtgcg
caggctatcatcgagcaagctaatttatatgcagaagctgaaacaatgttagatgaagtt
cgcgcattgctatcaggggctagcgttgaataa

DBGET integrated database retrieval system