Ailuropoda melanoleuca (giant panda): 100463887
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Entry
100463887 CDS
T01329
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04382
Cornified envelope formation
aml04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100463887 (COL17A1)
09158 Development and regeneration
04382 Cornified envelope formation
100463887 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
100463887
NCBI-ProteinID:
XP_019665115
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Position
6:complement(104905945..104956480)
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AA seq
1478 aa
AA seq
DB search
MDVTKKNKRDGTEVTERIITETVTTRLTSLPPKGGTSNGYAKTGSLGGGSRLEKHSLTHG
SSGYINSSGSTRGNASTSSYRRAHSPASTLPNSPGSTFERKTHITRHGTYEGSSSGNSSP
EYPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRNS
SNTLPIPKKGMVETKMVTASSQSVSGTYDATILDANLPSHMWSSTLPAGSSMGTYHNNVT
TQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGVSTCSSVFGVQNNLAPSSSTLSHSTA
TASAAYGVKKNLPQSPAAVSTGVSTSAACTTNVQSDDLLHKDCKFLILEKDNTPAKKEME
LLIMTKDSGKVFTASPASITATSFSDDTLKKEKQAAYTTDTCLVSEANGDVKTVSTKGKA
ASAEIHNYKHRGVGGVGGSGGGGGGGGPWGAAPAWCPCGSCCSWWKWLLGLLLTWLLLLG
LLFGLIALAEEVRALKARVAALEQSRGGVLLYKDTVERASKDRLQGAAPGAGAGAGKLGL
DGHSQEELWLFVRDRLMAEQESGNLRGSPGPKGDMGSQGPKGDRGLPGTPGIPGLLGHPG
PEGPKGQKGSVGEPGMEGPMGQRGREGPMGPRGEPGPPGFGEKGDRGAAGEPGVQGPPGV
PGSVGPKGSSGSPGPRGLPGPIGSQGLRGEVGLPGIKGDKGPLGSPGPKGDQGEKGPRGL
TGEPGMRGLPGAVGEPGAKGSVGPAGPDGHQGPRGEQGLMGMPGTRGPQGPSGDPGKPGL
TGPQGPQGLPGSPGRPGVKGEPGAPGRIMTSEGSSTITVPGPPGPPGAMGPPGPPGAPGP
VGPAGLPGQQGPRGERGLAGESFMGSSSSISEFLSAQGLDLRGPPGPPGPPGPPGEGLPG
PPGPPGSFLTNSETFFSGPPGPPGPKGDPGPPGPRGHQGEQGLPGFSASGSGSLGLNLQG
PPGPQGPKGDKGDPGVPGAPGIPGGLSQGGSSSSTMFMPGPPGPPGPPGPPGSISSSGRE
IQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTIAGETFDYSELASRVGSYLQTSGY
SISSSISSEDIVAVLKRDDVRQYLRQYVIGDWSLQSLDYAELSSRILSYMSSSGISIGLP
GPPGPPGLPGTSYEELLSLLQGSEYRGIIGPPGPPGPPGIPGNVWSSISVEDLSSYLHTA
GVSSIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPG
PPGPQGPPGDSRLVSMDGSYSRGSRSSSHSASVSRDSSYSSSMGIGGSSGGSLGEGGAFG
LDMGLGRGYGGAAEGGMYGGEGGPFGAGFAGGLDYNELAVRVSESLQRQGLLQGMAYTVQ
GPPGRPGPQGPPGISKVFSAYSNVTEDLMDFFRTYGAIPGPPGQKGEVGTPGPKGERGPT
GPPGRPGPPGPRGHKGEKGDKGDQVYAGRRKRSIALKP
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaaccaagaaaaacaaacgagatggcaccgaggtcactgaaagaattatcacg
gaaacagtaactacaagacttacatctttaccgccaaaagggggaaccagcaacggctat
gctaaaacaggctctcttggtggagggagccggctggagaagcacagcctgacccatggc
agcagtgggtacataaactcgagtgggagcactcgaggcaacgcctccacgtccagttac
aggagggctcactcccctgcctccactctgcccaactcaccgggctccacctttgaaagg
aaaactcacatcacccgccacggaacatacgaagggagctccagtggcaactcttctccg
gagtaccctcggaaggagttcgcatcttcttcaactagaggaaggagccaaacacgagaa
agtgaaatccgagtccgactgcagagcgcgtccccttctacccgatggacggaattggat
gatgttaagcgtctgctcaaggggagccgctcagccagcgtgagccccacccggaactcc
tccaacaccctccccatccccaagaaaggcatggtggagaccaaaatggtgacggccagc
tcccagtcggtgtccggcacctatgatgccaccatcttggacgccaaccttccctcccac
atgtggtcttccaccttgccggccgggtcctccatggggacctatcacaacaacgtgaca
acccagagctcgtccctcctcaacaccaacgcctattctgcaggatccgtcttcggagtt
ccaaacaacatggcatcctgctctcccacgctgcaccccggggtcagcacctgctcctca
gtgttcggcgtgcagaacaacctggcacccagctcatccaccctgtcccacagcacggcc
accgcctccgcagcgtatggtgtgaagaagaacctgccccagagccccgccgccgtgagc
actggcgtgtccacctctgcggcctgtaccacaaatgtccagagtgatgatctcctgcac
aaggactgcaaattcctgatcctggagaaagacaacacgccggccaagaaggagatggaa
ctgctgatcatgaccaaggacagcgggaaggtcttcactgcttccccggccagcatcact
gcaacttctttttcagatgataccctcaagaaggaaaagcaagctgcctacactacggac
acgtgcctggtgtcagaagctaacggagatgtgaagactgtgtccaccaagggcaaggcc
gcctctgcagaaatccacaactacaagcaccggggcgttggcggtgtaggcggcagcggc
ggcggcgggggcggcgggggcccgtggggggcggcgccagcttggtgcccctgcggctcc
tgctgcagctggtggaagtggctgctgggcctgctgctcacctggctgctgctcctgggg
ctgctctttggcctcatcgctctagcggaggaagtacgggcgctgaaagcgcgggtggcc
gcgctggagcagagccggggcggcgtgctgctttacaaggacacggtggagcgcgccagc
aaggaccggctgcagggcgctgccccgggcgcgggagcaggcgcggggaagctggggctg
gacggccacagtcaggaggaactctggctgttcgtgagggacaggctgatggcagaacaa
gaaagcggaaatctccgaggaagccccggcccgaaaggtgacatgggaagtcaaggccct
aaaggtgaccgaggtctccctgggactccaggcatccctgggctcttgggccacccgggt
ccggaaggaccaaagggacaaaaaggcagtgtgggagagccgggcatggagggacccatg
ggccagagagggcgagaaggtcccatgggacctcgcggtgaaccagggcctcctgggttt
ggagagaaaggagacagaggggctgctggtgaacccggtgttcagggcccacccggcgtc
ccaggttctgtgggtcccaaaggttccagtggttctcctggcccacggggtctcccaggc
cctataggttcccaagggctccgaggtgaagttggactccctggtatcaaaggtgacaaa
ggccctctggggtcaccaggacccaaaggtgaccagggagagaaaggaccccgaggcctc
acaggtgagccgggcatgagaggcttgcctggtgctgtgggtgagcctggagctaaagga
tcagtaggacccgctggccccgacggacaccagggtccaagaggtgaacaaggtctgatg
gggatgcctggaacccgcggcccgcaagggccttctggagacccaggaaagccaggtctc
acaggacctcagggacctcagggacttcctggcagccccggccgcccaggagttaaaggt
gaacccggagctccaggcaggatcatgacttcagaggggtcatcaacgatcactgtccca
ggccccccggggcctcctggagccatgggaccaccgggccctccaggtgccccaggtcct
gtgggtccagctggtctccctggacagcaaggcccacgcggggagcgaggacttgctgga
gaatcattcatgggcagcagcagctccatctctgagttcctctctgcccaaggtcttgat
ttacgaggtcccccaggcccacctggaccacctgggcctccaggagaaggcctgccaggc
ccaccaggcccaccgggatctttcctgaccaactcagagaccttcttctctggcccccct
ggccccccaggccccaagggagacccaggccccccaggcccccgaggacaccaaggcgag
caaggcctcccagggttctctgcctcaggttccggttctctcggactcaacctgcaggga
ccacctggcccccagggacccaaaggggacaaaggtgatcctggggtcccaggggctcct
ggcattcctggtggtctttctcaagggggatcatcatcgagcaccatgttcatgccgggc
cccccaggccccccaggccccccaggccctccaggctccatcagcagctctggccgggag
atccagcagtacatctctgagtatatgcagagcgacagcattcggtcctatctctctgga
gttcagggtccccctggaccacccggtcccccaggacctgtcaccaccatcgcgggggag
actttcgactattcagagctggcaagccgcgtcgggagctacttacagacctcggggtac
agcatcagctcctccatctcttctgaggacatcgtggctgtgctgaagcgggatgacgtg
agacagtacctgcgtcagtatgtgattggagattggtccctccagtctttggactacgcg
gagctgagcagtcgcattctcagctacatgtccagctctggaatcagcattgggcttcct
ggccccccgggaccccctggcttgccagggacatcctacgaggagctcctctccttgctt
caggggtctgaatacagaggcatcattgggcccccaggtccccctgggcccccaggtatc
ccaggcaacgtgtggtccagcattagcgtggaggacctctcttcctacctgcacactgca
ggcgtgtcgtctatccccggccctccgggccctcctggtcctccaggccctcgagggcct
ccgggtgtctcgggagctctagcaacctatgcagccgaaaacagtgacagcttccggagt
gaactgatcagctacctcacaagcccagatgtgcggagcttcatcgtgggcccaccaggc
cctccagggccccaggggccgcccggggacagccgcctcgtgtccatggatggctcctac
agccggggcagcaggtcctcctctcacagcgcgtcggtcagtcgggactcctcctacagc
tcttccatgggcataggaggatccagtggaggctcccttggtgaagggggggcctttggc
ctggacatgggcctgggccgaggctacgggggagcagcagaaggtggcatgtacggtggt
gaaggtggaccgttcggggctggctttgccggaggtctagactacaacgagctggctgtt
cgggtgtctgagagcttgcagcgtcagggcctgctgcaagggatggcctacactgtccag
ggcccaccgggccggccagggccccagggcccccccggcatcagcaaggtcttctctgcc
tacagcaacgtgactgaggacctcatggactttttccgaacttatggagccattccaggc
ccccctgggcagaaaggagaggtgggcaccccaggacccaaaggtgagaggggacccaca
ggaccaccaggtcggcctgggccacccggccctcgagggcacaaaggagaaaaaggagac
aaaggtgaccaagtctatgcagggcggagaaagagaagcatcgccctcaagccatga
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