Ailuropoda melanoleuca (giant panda): 100464510
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Entry
100464510 CDS
T01329
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100464510 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aml03400
]
100464510 (LIG3)
Enzymes [BR:
aml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100464510 (LIG3)
DNA repair and recombination proteins [BR:
aml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100464510 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100464510
NCBI-ProteinID:
XP_011228622
Ensembl:
ENSAMEG00000014509
UniProt:
A0A7N5JL15
LinkDB
All DBs
Position
13:9200300..9221033
Genome browser
AA seq
996 aa
AA seq
DB search
MTLAFKILFPPTLRALRRKELCLFREQHHWPDRRQFGHWSETDLLHGHCLLQRRKPALSF
QEGHLRPRATCLVFLPGVHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKATGTPKKKAVVQAKLTATGQVTSPVKGVSLVTNSNPRKFSGFSAKPNNSGAA
RSSPPPKASLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLRKGSAGDGF
HGDVHLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFTCSPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDEFLLRLSRLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRALSVQASLMT
PVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDRFNYFSRSLKPVLPHKVA
HFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKAADLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPD
SQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKTYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFT
VAAGEEGSSTTGGSSGENEGTSGPAGARKASRASPKQPSTSAKKAGGRLSSPNRRGGHQP
TVKVGQKRKAPAETPCPAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMA
SATHVLGSRDKNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgaccttggctttcaagatcctcttcccaccaaccctccgcgctctcaggcggaaagaa
ctgtgcctcttccgagagcagcatcactggcctgacagaagacagtttggccattggtca
gaaacagatctgcttcatgggcactgcctcctccagagaagaaagcctgctctgtctttc
caggaaggccatctaagaccacgtgccacctgccttgttttcctgccaggggtgcatgtg
ggactctgcagcggcccctgtgagatggccgagcaacggttctgtgtggactatgccaag
cgtggcacagccggctgcaaaaagtgcaaggagaaaattgtgaagggtgtatgccggatc
ggcaaagtggtgcccaatcccttctcagagtccgggggtgatatgaaagagtggtatcac
attaaatgcatgtttgagaaactggagcgggcccgggccaccacaaaaaaaattgaggac
ctcacagagctggaaggctgggaagagctggaagacaacgagaaggaacagataagccag
cacattgcagatctgtcttctaaggccacaggcacgccaaagaagaaagccgttgtccag
gctaagctgacagccactggccaggtgacctctccagtgaaaggtgtctctctcgtcacc
aatagcaatccccggaaattttctggtttttcagccaagcccaacaactctggggcagcc
cgctcaagccctccccctaaggcaagtttgtcctcaagcagatgtgaccccaagcacaag
gattgtctgctacgtgagtttcggaagttgtgtgccatggtggctgagaatcctagctac
aacacgaagacccagatcatccaggactttcttcggaaaggttcagcaggagatggtttc
cacggagatgtgcacctcacggtgaagctgctgctcccaggcgttatcaagagtgtttac
aacctgaacgataagcagattgtgaagctcttcagccgcatttttacctgcagcccagat
gatatggcgcgagacctagaacagggcgacgtgtcagagaccatcagagtcttctttgag
cagagcaagtctttccccccagctgccaagagcctccttaccatccaggaggtggacgaa
ttcctcctccggctttccaggctcaccaaggaggacgagcagcagcaggccctgcaggac
atcgcctccaggtgtacggccaatgaccttaagtgcatcatcagattgatcaaacacgat
ctgaagatgaatgcgggtgcaaagcacgtgttagatgcccttgaccccaatgcctatgaa
gccttcaaagcatcgcgcaacctgcaggacgtggtggagcgggtcctccgcaatgagcag
gaggtggagaaggagccaggccggagacgcgcgctgagtgtccaggcttccctgatgacg
ccagtgcagcccatgctggccgaggcctgcaagtccatcgagcacgcgatgaagaagtgt
cctaacggcatgttctctgagatcaagtacgacggggagcgagtgcaggtgcataagaac
ggggaccgtttcaactacttcagccgtagcctcaagcctgtcctgcctcacaaggtggcc
cacttcaaggactatatccctcaggctttccccgggggccacagcatgatcttggactct
gaggtgctcctgatcgacacgaagacaggcaaaccgctgccctttgggactcttggggtg
cacaagaaagctgccttccaggatgctaatgtttgcctgtttgtgtttgattgtatctac
ttcaatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgat
aacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcactaaagct
gcagacttggccgacatgataaaccgggtaatccgagaggggctggaagggctggtgctg
aaagacgtgaagggtacatatgagcctggaaagcggcactggctaaaagtgaagaaggac
tatttgaacgagggggccatggctgacacagctgacctggtggtccttggggccttctac
gggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctacgacccagac
agccagaagtggtgcacggtcaccaagtgttcgggaggccatgatgatgccacccttgcc
cgcctgcagaaggaactggacatggtgaagatcagcaaggatcccagcaagatacccagc
tggctgaaaatcaacaagacctactatcctgacttcatagtcccagacccaaagaaagct
gccgtgtgggagatcacaggggctgagttctccaagtctgaggctcacacagccgacggg
atctccatccggttcccacgttgcacccgcatccgtgacgataaggactggaaatctgcc
actaacctcccccaactcaaggaactgtaccagctgtccaaggagagggcagacttcact
gtggcggctggagaggaggggagctccaccacagggggcagcagcggagagaacgagggt
acctcggggcctgcgggggctcgcaaggcctccagggcctccccgaagcagccctccacc
agtgccaagaaggcaggagggaggctgagcagccccaaccgcagaggcggccaccagccg
actgtgaaagtggggcagaagcggaaggctcccgctgagaccccgtgcccagcaaaggtg
ctgctggacatctttactggggtgcggctctacctgccaccctccacaccagacttcagc
cgtctcagacgctattttgtggcattcgatggggacctggtgcaggagtttgacatggcc
tcagccacacacgtgctgggtagcagggacaagaaccctgaggcccagcaggtctccccg
gagtggatttgggcgtgtatccggaaacgaaggctggtagccccatgctag
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