Ailuropoda melanoleuca (giant panda): 100464575
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Entry
100464575 CDS
T01329
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100464575 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aml04147
]
100464575 (COL18A1)
00535 Proteoglycans [BR:
aml00535
]
100464575 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
aml00536
]
100464575 (COL18A1)
Exosome [BR:
aml04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100464575 (COL18A1)
Proteoglycans [BR:
aml00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100464575 (COL18A1)
Glycosaminoglycan binding proteins [BR:
aml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100464575 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100464575
NCBI-ProteinID:
XP_034510272
Ensembl:
ENSAMEG00000001767
LinkDB
All DBs
Position
1:complement(1068388..1153306)
Genome browser
AA seq
1718 aa
AA seq
DB search
MARHPGSHLGPLLLLVYCLAAAQANLLNLNWLWSTGTDGPTAGLVSEPPGSPHVQPREDT
TTHVAPQHGPTEQGRSPASSELPVERLETGQGRASATGPDLKEENIAGVGAKILNVAQGI
RSFVQLWDDSTPTTNSPGAETAAPATPTAPLTLPGPSSPPQENGTALWLDSWTLSSPGSQ
RIEAGTQPVPTQPPPFPGGPSVPPPSPGRASLSSVPGGAPPWGSQRSLGRPQGLDSGGLQ
AAAAHPGQQHRLPDILRHMPHLLPLVTGPLGALAAPSALSSGPPTLVSRIPLSAMTGVKG
AWSAPVADSVGPGLANNSALLGADPLIPAGQPVHAAGRCLPLPPSLPVCSRLGIGRSWLP
NHLHHGTSEEVRAAARAWGDLLQTHCHRFLAWFFCLLLAPPCGAHPPPAPPPCRQFCEAL
EDACWSHLDGGGLPVTCASLPAQEDGFCVFIGPGAESLGTEVGLLQLLGEPPPQQVTQVD
DPDVGPAFVFGPDANSGQVARYHFPSPFFRDFSLHFHVRPATKDAGVLFAITDAAQAVVS
VGVKLSGVRDGHQHIQILYTEPGATRTHTAASFRLPAFTGQWTRFALSVDGATVALFVDC
DLFQRVPLVRSPRGLELEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPQVSPMHCLEED
DEDSGGVSGDFGSGLEETREPLREPPGPSPKPSLPEAPPVTSPPLAAGKGVEDSRTEEIE
EETTVSSLGARTLPGLDTVTAESVQSFGDRVEEGPAERSPDARPVPGPQGPPGPPGPPGK
DGAPGRDGEPGDPGEDGRPGDPGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPP
GPSFRHDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPG
PAGLPGVPGRDGPPGLPGIPGPPGPPGKDGGPGKTGQKGSPGEVGAPGPKGSKGDPGPAG
TPGENGLAGAPGPAGPPGPPGPPGPPGPGLAAGFDDMEGSGGPFWSMARGASGPQGPAGL
PGVKGDPGVTGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGEKGTQGEKGDPGRDGV
GQPGLPGPPGPPGPVVYVSEQDRALASVPGPEGRPGYAGFPGPAGPKGDLGSKGQRGLPG
PKGEKGEPGPVFSPDGSMLAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMN
GLKGEKGEPGHASVGFGVRGPPGPPGPPGPPGPPGTPVYDNNAFMESGRPGPPGLPGLQG
PSGPKGDKGDVGPPGPPGQFPFDLLQLGAEMKGEKGDRGDTGQKGERGEPGGGGFFSSSV
PGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPGPPGPPGPPGPPSFPG
PYRQTISVPGPPGPPGPPGPPGTMGISSGQVRIWATYQTMLDKVPEVPEGWLIFVAEREE
LYVRVRNGLRKVLLEARTPLPRGTDNEVAALQPPAGNPYPRRELTHSTARPWRADDILAN
PPRLPDPQPYPGAPHHGSYLHFQPAHPTSGPTHTHTHQDYQPVLHLVALNSPQPGGMRGI
RGADFQCFQQARAVGLAGTFRAFLSSRLQDLYSVVRRADRTGVPVVNLRDEVLFPSWEAL
FSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPGGRRLTDSYCETWRTEAAAAT
GQASSLLAGRLLGQKAASCHNAFIVLCIENSFMTSSSK
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccaccccggcagccacctcggcccgttgctgctgcttgtgtattgcctcgcg
gccgcccaggctaaccttctgaacttgaactggctgtggtccactgggaccgacgggccc
acagccggactggtctctgagcccccagggagcccacatgtgcagcccagagaggacacc
accacacatgtggccccgcagcatggccccacggagcaggggaggtcccctgccagctcc
gagctccccgtggagaggctggagactggccagggcagggcttctgccacgggcccggac
ttgaaggaggagaacatcgccggcgtgggagccaagatcctgaatgtggctcagggcatc
cggagctttgtccagctgtgggatgacagcactcccaccacgaactcccccggggcagag
acggcagcccctgcgacccccacagcccccctcaccctgcccgggccctccagcccccct
caggagaacgggaccgctctctggctggacagttggaccctgagctctccgggctcccag
aggatcgaggccggcacccagccagtgcccacccagccgcctcccttcccgggcgggccc
tcggtgccaccaccttctccaggtagagcttctctgtcctctgtgccaggtggggcccct
ccctggggcagccagcggtccctggggcggccccagggtctggacagtggaggactccag
gccgcggcagcccatcccggccagcagcaccggctccctgacatcctcaggcacatgcca
catctgcttcccctggtgacgggtcccctgggcgcccttgctgccccctcggctctctcc
tctggcccccccaccctggtgtcccggatcccactctcagctatgacgggggtcaagggt
gcttggtctgctcccgtggctgactctgtgggtcctggtctcgctaacaactctgcactg
ctcggggcggacccgctgatccccgccgggcagcccgtccacgccgccggccgctgcctg
cccctgcctccctccctgccggtctgcagccgcctgggcatcgggcgctcctggctgccc
aaccacctgcaccacgggaccagtgaggaggtgcgggctgccgcccgggcgtggggggac
ctcctccagacgcactgccaccgcttcctcgcctggttcttctgtctgctgctggccccg
ccctgtggcgcccacccgccgcccgcgcctccgccctgccgccagttctgcgaggccctg
gaggacgcgtgctggagccacctggacgggggcgggctgccggtcacctgcgcctcgctc
ccggcccaggaggacggcttctgcgtgtttattgggccgggtgcagaaagcctgggcacg
gaggtggggctcctgcagctgcttggagagcccccgccccagcaggtcactcaggtggac
gaccccgatgtcggaccagccttcgtctttggcccggatgccaacagcggccaggtggcc
cggtaccacttccccagcccgttcttccgtgatttctcgctgcacttccatgtccggcct
gccaccaaggacgcaggggtgctgtttgccatcacggacgcagcccaggcggtggtctcc
gtgggcgtgaagttgtcgggcgtgcgtgatgggcaccagcacatccagatcctgtacacc
gagcccggggccacgcggacccacacggctgccagcttccgcctgcctgccttcaccggc
cagtggacacgctttgcgctcagcgtggacggtgcgactgtggcactgtttgtggactgt
gatttgttccagagagtgcccttggtgcgctccccacggggcctggagctggagcccggc
gctggcctcttcgtggcccaggccggaggagcagatcctgataagttccaggggatgatc
gcggagctgagggtgcgcggggacccccaggtgagccccatgcactgtctggaggaggac
gatgaggacagcggcggggtgtccggagacttcgggagcgggctggaggagacccgggag
cctctcagggagccgccgggtccgtcccccaaacccagcctccccgaggctcccccggtc
acttctccgcccttggctgcaggcaagggtgtggaagattccagaactgaagaaattgag
gaagaaaccacggtgtcttcgttgggagctcggaccctccccggcttggatacggtcacc
gcagagagcgttcagagctttggggaccgcgtagaagagggtcctgcagagcggagcccc
gatgcgcggcctgtgcccgggccacagggcccccctggccccccagggccaccggggaag
gatggggcccccggaagggacggcgagccgggggatcccggcgaggatgggagaccgggt
gaccctggaccgcagggcttccccgggaccccaggagacgtgggccccaagggcgagaag
ggcgaccctggggtcgggccaagaggacccccaggaccccaagggcctccagggccacca
ggaccctccttcagacatgacaagctgaccttcatcgacatggaggggtccgggttcggc
ggtgacctggagagcctccgaggccccagaggcttccccggccccccggggcccccaggc
gtcccaggcctgcccggagagccaggccgctttgggatgaacagctcagacgtcccagga
cctgccggccttcctggtgtgcccgggcgggatgggccccccgggcttcctggcatcccg
ggtccgccaggtcctccaggaaaagacggaggaccagggaagacgggacagaaaggcagc
cccggtgaggtgggcgctccaggacctaagggaagcaagggtgaccccggccccgctggc
actcctggggagaatggcttggcaggagcccccggaccagctggaccaccaggacccccc
ggaccccccgggccaccaggaccaggacttgccgcagggtttgatgacatggaaggctcc
gggggacccttctggtcgatggctcgaggagccagcgggccacagggaccggctggcctg
cccggggtcaagggggatcctggagtaaccggaccaccgggcgccaagggagaagtcggg
gccgatggacctcccgggttccccggcctccctggcagagaggggacggctggagcccag
ggacccaaaggagaaaaggggacccaaggagagaaaggcgacccagggagggacggagtg
gggcagcctggcctccctggaccccccggacctccggggcctgtcgtctacgtgtcggag
caggatagagcgctggcaagcgtgccgggacctgagggccggccggggtacgcgggcttt
cctggaccggccgggccaaagggagatctgggctctaaaggccagcggggcctcccggga
cccaagggcgagaagggcgagccgggcccggtcttcagccctgatggcagtatgctggcc
cccgcccagaaaggggccaagggagagcctggcttccgaggacccccgggtccctacgga
cggccggggcacaagggagagatcggcttccccgggcggccgggtcgcccagggatgaac
ggattgaagggggagaaaggggagccaggacatgccagcgtcggctttggtgtgaggggt
ccacccggtcctccagggcctccggggcccccaggccctcccgggactcccgtctatgac
aacaacgcatttatggagtctggccgccctggacctccaggattgccagggctccagggg
ccttccggacccaagggtgacaaaggagacgtgggccctccaggaccaccagggcagttc
ccgttcgacctcctccagctgggggctgaaatgaagggggagaagggtgaccgaggggac
accgggcagaagggcgaacggggtgagcccgggggtggcggattcttcagctcaagtgtg
cccggcccccccggcccaccaggctaccctgggattccgggtcccaagggagagagcatc
cggggccagcccggcccacctggacctcagggaccccctggcatcggccatgaggggcgt
cagggacctcctgggcctcctggaccccctggtccaccagggcccccttccttccctggc
ccttatagacagaccatcagtgttcctggccccccaggcccaccggggccccctgggccg
cctggaaccatgggcatatcctcagggcaggtgaggatctgggccacgtaccagaccatg
ctggacaaggtgccggaggtgccggagggctggctcatcttcgtggccgagagggaggag
ctgtacgtccgcgtccgcaacgggctccggaaggtcctgctggaggcgcggacgccactc
ccacgcgggacggacaacgaggtggccgccttgcagccccccgcgggcaacccgtacccc
cggcgggagctcacccactccacggcgcggccctggcgggcagacgacatcctggccaac
cccccgcgtctgccggacccccagccctaccccggagccccacaccacggctcctacctg
cacttccagccggctcaccccactagcgggcccacccacacccacacccaccaggactac
cagccggtgctgcacctggtggcgctgaacagcccccagccgggaggcatgcgaggcatc
cgcggggcggacttccagtgcttccagcaggcgcgcgccgtgggcctggccgggaccttc
cgcgccttcctgtcctcccggctgcaggacctctacagcgtcgtgcgccgcgccgaccgc
acaggcgtgcccgtcgttaacctcagggacgaggtgctgttccccagctgggaggcctta
ttctcgggctccgagggccagctgaagcccggggcccgcatcttctctttcgacggcaga
gacgtcctgcagcaccccgcctggccccagaagagcgtgtggcacggctcagaccccggg
gggcgccggctgaccgacagctactgtgagacgtggcggacggaggctgcggcagccacg
ggtcaggcttcgtcgctactggccggcaggctgctggggcagaaagccgcgagctgccac
aacgccttcatcgtgctgtgcatcgagaatagcttcatgacctcctcctccaagtag
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integrated database retrieval system
